Non-Coding RNA Search

Ss1.1-rcbe30_b14.5

Sequence:


               
               TTAAATCATTTATTCTCTTGTGTGTATGTGGACACACACACACCCACCCCACAAATCCAC
ATCCACTCTTGAGTATGTAACTATTCCCTAGATATGATTTTACCATTTCTTCTAACCTAA
CTTCTGTAGATCTTGCTGTGGTCCTTCTCTACACAAATTTGCTAAATATTTGGAGAAATA
AGAGGGTCTTTTATGTCTGTTTAGTAGTTGATTTTGCTGGCTCTTAAGGCATTATCTTTT
ATAAATCCCTAAGTGTTAGAAGTGGGAAAAACCATCTTTCTTTTAAATTTAGCAAATAGC
ATTTACGTGCATATGTGCTTATGCCATCCACACACTTACACTGTAATAGAAATACCGTGG
AAAAGCAAACCACAAGCTTTTAACACTGTCAGGCATGCGCTTTTCCCCCTCTCATCTCCT
CCTGAAGAGATGTTTAGAAGAATGAGAGGCCTCTCTGGCTCTGCGTGTATAAGTCGTACC
AGAAAAAAATGTCAACCCTTTTTTAGATGCAGGATCACACTATAATAAACGTGAATCTAA
GCAATCACTCAAGTGCTTCCTAAGCAATGATTCCAGCTATGAGCACACACCTATCCTTCT
TTTATTTAGTAAACGCCAATAAAGCTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGG
GGGGGCCGTTTTAAATTTTCCTTGGGGGGGCCAAATTTTACCCGTCCCCTTTTTTTTTGA
AAAAGGGGGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAATCATTTATTCTCTTGTGTGTATGTGGACACACACACACCCACCCCACAAATCCAC
ATCCACTCTTGAGTATGTAACTATTCCCTAGATATGATTTTACCATTTCTTCTAACCTAA
CTTCTGTAGATCTTGCTGTGGTCCTTCTCTACACAAATTTGCTAAATATTTGGAGAAATA
AGAGGGTCTTTTATGTCTGTTTAGTAGTTGATTTTGCTGGCTCTTAAGGCATTATCTTTT
ATAAATCCCTAAGTGTTAGAAGTGGGAAAAACCATCTTTCTTTTAAATTTAGCAAATAGC
ATTTACGTGCATATGTGCTTATGCCATCCACACACTTACACTGTAATAGAAATACCGTGG
AAAAGCAAACCACAAGCTTTTAACACTGTCAGGCATGCGCTTTTCCCCCTCTCATCTCCT
CCTGAAGAGATGTTTAGAAGAATGAGAGGCCTCTCTGGCTCTGCGTGTATAAGTCGTACC
AGAAAAAAATGTCAACCCTTTTTTAGATGCAGGATCACACTATAATAAACGTGAATCTAA
GCAATCACTCAAGTGCTTCCTAAGCAATGATTCCAGCTATGAGCACACACCTATCCTTCT
TTTATTTAGTAAACGCCAATAAAGCTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGG
GGGGGCCGTTTTAAATTTTCCTTGGGGGGGCCAAATTTTACCCGTCCCCTTTTTTTTTGA
AAAAGGGGGCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               229-348, - strand, RNAz p=0.622713

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               229-348, - strand, RNAz p=0.622713

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               32-630, gnl|bosTau2|chr18 (20956215-20955618)
               

               
               32-630, gnl|Hg17|chr16 (47916622-47917203)
               

               
               32-630, gnl|Mm7|chr8 (86102006-86102547)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-630, gnl|bosTau2|chr18 (20956215-20955618)
               

               
               32-630, gnl|Hg17|chr16 (47916622-47917203)
               

               
               32-630, gnl|Mm7|chr8 (86102006-86102547)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbe (0.717703)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.717703)

	32-630, gnl\|bosTau2\|chr18 (20956215-20955618)
	32-630, gnl\|Hg17\|chr16 (47916622-47917203)
	32-630, gnl\|Mm7\|chr8 (86102006-86102547)