Non-Coding RNA Search

Ss1.1-rcbe30_h10.5

Sequence:


               
               GTGAATTGCACATCCGTCTCCGTTTGAGATGATGGCCTATTAATGAGCACTGGTCCAACA
TAGCCAACCCTCCCCCACGGCACCAGGTTCATGGAGGCAAGGAGGAGGGCAAGATCTACT
GTAGGGGATTCAGGAATCAGTCGTGGTTGGTCAGGACGAAAGTTGGGGTAAGTTTGGTTG
GTCAGAGGGAGATGTGCTGGAGATTGTGAAAAACGGATTCTCGAATGATCTACTCTTAAG
GCAGGGAAGGTTCATTTGTAAGTAGTAATGTGAACTGAATTACATAAGAGTGTGGCCTTT
GTTGTGATATACTATGTATTTTCTTATATGCATGAGCCAAACTGTTGCATCATAATTTAG
CACTGATGTCCGCTTTTATTTTGATCATCTTTGTCCACCCTTATTAGTTCTTGGCTGTTA
ACTGTAGATAAACTGTTGTAAATACGGCAACCTCTGGTTGCTGCTGTCACCTTGGTTCAA
TTCCGAGCAAGGAGCCACAAATAAGAACTCCACCGTGTCCTCAGAAGAAAGGGCATTTTT
ACCTTTGAACCAAAAAGAGAAAAAAAAAAATCAGAAGCATTACATCCTGAGGCTAATTAA
CTATAAGACATTTTTAACTCTGACTACTGTAATTTGACACCATTTGAAATAACCAATTCA
GAGACACTAAAGATTTCACAACATTCATTGGTATGTAACAAAACTATTATGGTATGGGTT
TGGTTTTTTTTGTTTTTTTTTGTATTGCTGTTAAGTATTGTTTTGTGTGTGTGTGTGTGT
GTGTTGGAACCTCCTGGGGACATGTTATATTTTGAAGTGATTAAACTATTTAATTGTGTG
TCTATATTTTGGAATGAAATTATTTCTTCATTAAAAAATGTTTTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAATTGCACATCCGTCTCCGTTTGAGATGATGGCCTATTAATGAGCACTGGTCCAACA
TAGCCAACCCTCCCCCACGGCACCAGGTTCATGGAGGCAAGGAGGAGGGCAAGATCTACT
GTAGGGGATTCAGGAATCAGTCGTGGTTGGTCAGGACGAAAGTTGGGGTAAGTTTGGTTG
GTCAGAGGGAGATGTGCTGGAGATTGTGAAAAACGGATTCTCGAATGATCTACTCTTAAG
GCAGGGAAGGTTCATTTGTAAGTAGTAATGTGAACTGAATTACATAAGAGTGTGGCCTTT
GTTGTGATATACTATGTATTTTCTTATATGCATGAGCCAAACTGTTGCATCATAATTTAG
CACTGATGTCCGCTTTTATTTTGATCATCTTTGTCCACCCTTATTAGTTCTTGGCTGTTA
ACTGTAGATAAACTGTTGTAAATACGGCAACCTCTGGTTGCTGCTGTCACCTTGGTTCAA
TTCCGAGCAAGGAGCCACAAATAAGAACTCCACCGTGTCCTCAGAAGAAAGGGCATTTTT
ACCTTTGAACCAAAAAGAGAAAAAAAAAAATCAGAAGCATTACATCCTGAGGCTAATTAA
CTATAAGACATTTTTAACTCTGACTACTGTAATTTGACACCATTTGAAATAACCAATTCA
GAGACACTAAAGATTTCACAACATTCATTGGTATGTAACAAAACTATTATGGTATGGGTT
TGGTTTTTTTTGTTTTTTTTTGTATTGCTGTTAAGTATTGTTTTGTGTGTGTGTGTGTGT
GTGTTGGAACCTCCTGGGGACATGTTATATTTTGAAGTGATTAAACTATTTAATTGTGTG
TCTATATTTTGGAATGAAATTATTTCTTCATTAAAAAATGTTTTTAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61842225|ref|XP_618683.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61842225|ref|XP_618683.1|

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               60-152, - strand, RNAz p=0.541676
               

               
               433-584, - strand, RNAz p=0.604824
               

               
               441-615, - strand, RNAz p=0.79774

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               60-152, - strand, RNAz p=0.541676
               

               
               433-584, - strand, RNAz p=0.604824
               

               
               441-615, - strand, RNAz p=0.79774

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               2-888, gnl|bosTau2|chr24 (18602396-18603248)
               

               
               2-888, gnl|canFam2|chr7 (58050765-58049758)
               

               
               2-888, gnl|dasNov1|scaffold_763 (98980-99960)
               

               
               2-888, gnl|galGal2|chr2 (106725343-106726250)
               

               
               2-888, gnl|hg17|chr18 (30724074-30725075)
               

               
               2-888, gnl|Hg17|chr18 (30724485-30725357)
               

               
               2-888, gnl|loxAfr1|scaffold_511 (45802-46789)
               

               
               2-888, gnl|mm7|chr18 (24043075-24044073)
               

               
               2-888, gnl|Mm7|chr18 (24043483-24044365)
               

               
               2-888, gnl|monDom2|scaffold_4 (120207317-120206360)
               

               
               2-888, gnl|oryCun1|scaffold_205762 (75496-76491)
               

               
               2-888, gnl|panTro1|chr17 (26678450-26679451)
               

               
               2-888, gnl|rheMac2|chr18 (27879721-27880723)
               

               
               2-888, gnl|rn3|chr18 (15603141-15604138)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-888, gnl|bosTau2|chr24 (18602396-18603248)
               

               
               2-888, gnl|canFam2|chr7 (58050765-58049758)
               

               
               2-888, gnl|dasNov1|scaffold_763 (98980-99960)
               

               
               2-888, gnl|galGal2|chr2 (106725343-106726250)
               

               
               2-888, gnl|hg17|chr18 (30724074-30725075)
               

               
               2-888, gnl|Hg17|chr18 (30724485-30725357)
               

               
               2-888, gnl|loxAfr1|scaffold_511 (45802-46789)
               

               
               2-888, gnl|mm7|chr18 (24043075-24044073)
               

               
               2-888, gnl|Mm7|chr18 (24043483-24044365)
               

               
               2-888, gnl|monDom2|scaffold_4 (120207317-120206360)
               

               
               2-888, gnl|oryCun1|scaffold_205762 (75496-76491)
               

               
               2-888, gnl|panTro1|chr17 (26678450-26679451)
               

               
               2-888, gnl|rheMac2|chr18 (27879721-27880723)
               

               
               2-888, gnl|rn3|chr18 (15603141-15604138)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

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               vin (0.665115)
               

               
               cbe (0.478469)
               

               
               ste (0.405625)
               

               
               aor (0.390549)
               

               
               fco (0.314416)
               

               
               isp (0.300752)
               

               
               ldo (0.291008)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               spc (0.113366)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.665115)
               

               
               cbe (0.478469)
               

               
               ste (0.405625)
               

               
               aor (0.390549)
               

               
               fco (0.314416)
               

               
               isp (0.300752)
               

               
               ldo (0.291008)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               spc (0.113366)

	60-152, - strand, RNAz p=0.541676
	433-584, - strand, RNAz p=0.604824
	441-615, - strand, RNAz p=0.79774

	2-888, gnl\|bosTau2\|chr24 (18602396-18603248)
	2-888, gnl\|canFam2\|chr7 (58050765-58049758)
	2-888, gnl\|dasNov1\|scaffold_763 (98980-99960)
	2-888, gnl\|galGal2\|chr2 (106725343-106726250)
	2-888, gnl\|hg17\|chr18 (30724074-30725075)
	2-888, gnl\|Hg17\|chr18 (30724485-30725357)
	2-888, gnl\|loxAfr1\|scaffold_511 (45802-46789)
	2-888, gnl\|mm7\|chr18 (24043075-24044073)
	2-888, gnl\|Mm7\|chr18 (24043483-24044365)
	2-888, gnl\|monDom2\|scaffold_4 (120207317-120206360)
	2-888, gnl\|oryCun1\|scaffold_205762 (75496-76491)
	2-888, gnl\|panTro1\|chr17 (26678450-26679451)
	2-888, gnl\|rheMac2\|chr18 (27879721-27880723)
	2-888, gnl\|rn3\|chr18 (15603141-15604138)

	vin (0.665115)
	cbe (0.478469)
	ste (0.405625)
	aor (0.390549)
	fco (0.314416)
	isp (0.300752)
	ldo (0.291008)
	gul (0.177588)
	fbs (0.175346)
	cut (0.169924)
	tbr (0.154178)
	lin (0.145603)
	spl (0.143184)
	ret (0.128733)
	spc (0.113366)