Non-Coding RNA Search

Ss1.1-rcbl0_002226.5

Sequence:


               
               CATATATAAACACACATACATATGATTTTAAATAGCTATTGGCACAATATTACAAATCAC
TGGAACTCTAGTTTTAAATTATGTTCTTTATTGTAATGTTTTTGTGTCAGTGTTTTCTGT
ACATTAATAATATTTGTGAATTTACAACTCACAGAGTGGTAGTTGTTGTTAGTTTTTGCC
CTCCCTAAATTAGTATAATTAATTTATTAACTGCCTCAGTATATCTGGGAGCAGTGAAAT
CTGCTGTGCACAGAGCTTTCGTGGTCACTGCTAAGCAGTCCTCTGGCATTAATTGATCAT
CTACTATGTTCTGAGCATGCACACTTAGAAACTAAGTTCTGTTAATCTTAGTACTCAACA
ACTACTGGAAAGATGAATCTCTGTTTGGCCTGTTAAGTAATAAAGGAAAAGAAAATAAAA
ACACCTATAAATGAACGTGGCTATCCTATGAAACACAATAATTCATACTTTGAGGAAACC
CTTATCTTAGTATGAATATTGATAGGCAATTCGGAAGCTCTCTCCTATATTTGTGTCCTT
ATGAAGTATTAAAATCTGTTTAATTAATTATTTTTCTATGGAAGAGTTATTATTTTAAGC
TAAAAAAACATGAATTATTGACTATAAAAGTACAGTATGAAGTCACACTTGGATCAGAAT
TATTAATGATTTATTACAAACCACAATCATTCCTCCTATTAACCCTTAACTCACAAGACC
AGAAGAGAGCTGACTCCAGATAAACTTTGAATATCAATTCAACATGAGCTTTAGGTAAAC
GAGGGACAGTCCCATCACCAAGGGGCCCTTCTCTTTCCAATACTGCGTTCTGTTGCACTT
TTGGATTTAATATTTGTCCCCAATGCCATTTGGTACCTCTAGAAATTTCTTGATACTTTC
TGTCCTGTTTATATTCCTGTATTTGGTACCAAACTTTTCCAAATGCTAAAATCTAAGCAA
TTCAAATCTAAAGGGTATGTCTTATCATAAGATGATTCTGAGGGAGATAGAGAAACAATT
TGGGGTTCAAGAAGAAATTTCTCCTTAATGTTATAAAGTATCTAAAAAATCCTGTAATTG
TTTTATAGATATGATATAAAGACCTCCTGCACCCAAGTTAACAAAAAAAAATGATAGAGT
GTTTAATTACACAATCATAAAAAAGTTTTAATTCTTGTCTGCTTTGTAATTTAGATGACT
CCCTAGGATTCTAATAAACAAGCACTTGATTGTATTGAGAAGCAAAAGCATCACTCCACT
TGTCTATTTTGTTTCCATATGTTTTAATATTTTAAAACTATGTCTTTTATTTTATTCGTA
AACTTTTGTATTTTCCATTTTCCATTTATTTGTAAATTTGTTTATTTTAAAAATAAACCA
TTTATTTTCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATATATAAACACACATACATATGATTTTAAATAGCTATTGGCACAATATTACAAATCAC
TGGAACTCTAGTTTTAAATTATGTTCTTTATTGTAATGTTTTTGTGTCAGTGTTTTCTGT
ACATTAATAATATTTGTGAATTTACAACTCACAGAGTGGTAGTTGTTGTTAGTTTTTGCC
CTCCCTAAATTAGTATAATTAATTTATTAACTGCCTCAGTATATCTGGGAGCAGTGAAAT
CTGCTGTGCACAGAGCTTTCGTGGTCACTGCTAAGCAGTCCTCTGGCATTAATTGATCAT
CTACTATGTTCTGAGCATGCACACTTAGAAACTAAGTTCTGTTAATCTTAGTACTCAACA
ACTACTGGAAAGATGAATCTCTGTTTGGCCTGTTAAGTAATAAAGGAAAAGAAAATAAAA
ACACCTATAAATGAACGTGGCTATCCTATGAAACACAATAATTCATACTTTGAGGAAACC
CTTATCTTAGTATGAATATTGATAGGCAATTCGGAAGCTCTCTCCTATATTTGTGTCCTT
ATGAAGTATTAAAATCTGTTTAATTAATTATTTTTCTATGGAAGAGTTATTATTTTAAGC
TAAAAAAACATGAATTATTGACTATAAAAGTACAGTATGAAGTCACACTTGGATCAGAAT
TATTAATGATTTATTACAAACCACAATCATTCCTCCTATTAACCCTTAACTCACAAGACC
AGAAGAGAGCTGACTCCAGATAAACTTTGAATATCAATTCAACATGAGCTTTAGGTAAAC
GAGGGACAGTCCCATCACCAAGGGGCCCTTCTCTTTCCAATACTGCGTTCTGTTGCACTT
TTGGATTTAATATTTGTCCCCAATGCCATTTGGTACCTCTAGAAATTTCTTGATACTTTC
TGTCCTGTTTATATTCCTGTATTTGGTACCAAACTTTTCCAAATGCTAAAATCTAAGCAA
TTCAAATCTAAAGGGTATGTCTTATCATAAGATGATTCTGAGGGAGATAGAGAAACAATT
TGGGGTTCAAGAAGAAATTTCTCCTTAATGTTATAAAGTATCTAAAAAATCCTGTAATTG
TTTTATAGATATGATATAAAGACCTCCTGCACCCAAGTTAACAAAAAAAAATGATAGAGT
GTTTAATTACACAATCATAAAAAAGTTTTAATTCTTGTCTGCTTTGTAATTTAGATGACT
CCCTAGGATTCTAATAAACAAGCACTTGATTGTATTGAGAAGCAAAAGCATCACTCCACT
TGTCTATTTTGTTTCCATATGTTTTAATATTTTAAAACTATGTCTTTTATTTTATTCGTA
AACTTTTGTATTTTCCATTTTCCATTTATTTGTAAATTTGTTTATTTTAAAAATAAACCA
TTTATTTTCAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               741-857, - strand, RNAz p=0.653431

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               741-857, - strand, RNAz p=0.653431

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1000, gnl|bosTau2|chr1 (47682017-47680999)
               

               
               2-1000, gnl|Hg17|chr3 (191850564-191851554)
               

               
               2-1000, gnl|Mm7|chr16 (26377501-26378449)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1000, gnl|bosTau2|chr1 (47682017-47680999)
               

               
               2-1000, gnl|Hg17|chr3 (191850564-191851554)
               

               
               2-1000, gnl|Mm7|chr16 (26377501-26378449)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               cbl (0.688784)
               

               
               fat (0.294855)
               

               
               tra (0.246184)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               kid (0.129735)
               

               
               pgl (0.118483)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.688784)
               

               
               fat (0.294855)
               

               
               tra (0.246184)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               kid (0.129735)
               

               
               pgl (0.118483)

	2-1000, gnl\|bosTau2\|chr1 (47682017-47680999)
	2-1000, gnl\|Hg17\|chr3 (191850564-191851554)
	2-1000, gnl\|Mm7\|chr16 (26377501-26378449)

	cbl (0.688784)
	fat (0.294855)
	tra (0.246184)
	fco (0.157208)
	bfe (0.149858)
	ski (0.146735)
	liv (0.146284)
	kid (0.129735)
	pgl (0.118483)