Non-Coding RNA Search

Ss1.1-rcbl0_002265.5.5

Sequence:


               
               GACTCGGTGAAGAGGAGGGGGGACCTCTCCCTGCGGCCGGAGGATGGCGTGTGGGCGCTG
CGCCTCTCCTCCTCTGGCATCTGGGCCAACACCAGACCCGAGGCCGAGCTCTTCCCGGCA
CAGCGGCCCCGGAGGGTGGGCATCGCCCTGGATTACGAAGGGGGCACCGTGACTTTCACC
AACGCAGAGTCGCAAGAACTCATCTATACCTTCAAGGCCACCTTCACCCGGCGTCTGCTC
CCCTTCCTGTGGCTCAGGTGGCCGGGAACACGCCTCCTGCTGAGACCCTGAGCCCCGACT
CTGCTCCCGGCTCCACCCCCACCGATGCCTCAGGTCTCTGGGCTCTGACAGGGGAGGAGA
GGCCAATGGAGCACCTGGAGCAGGCAAGGGGAGGAACCCCCAGTCGGCCGCCACTCCCTC
CTTGTGGCTGTAGCCCCCTTGGGACCTCACCCAGTGCTATTCCCTCTGTCCAGCCCTCTT
CTCCTGCCTCCGGAGGTTCCTGTGCGGACTTCCAACCCTGAAGTCCATGAGGGCTCCTCC
CTCCTGCCCACTGCCTTCAACCCAACCCCAGCCTCTCCTTGGCGAGCAGAGGCAAGGCAG
CATTTTCTTGCCCCCCTGTTCTTGGGAAAGACCAAACTGGTCTTTGGTCTTGGTACACCC
AAGGCCATTTTTCTGTCCTCCAATCCCATGACTTCCCCTTTGCCCAAATCTGCTTCTTTA
CCTGCCTTCCCTGGCCCTTTAAACACACCTGCTGCCGCCCTGACTCAGAGTTAAAGGCAC
ATGGAAATGTTGGACATGAACTGAGTGGCAGTCCACTGAGACTTCCCAGGCCGTTTAAGG
TGCCTGGGGCCAGTGGAAAGCATCTGCTCAGAAGGTCCAGAGAGGAGTCCCTGCTTCTCT
GGGACCCAAGCTGAGCATGTGAGGTTTCCGGCACGAGGAGGTGGGACTCCCTGAAGCCAC
CTGTGGTCTAAGAGGAAGGATCTGGATACATGTGGTGTTAGGGTAGTTGTGATCGGTGAT
CAATAAATTATCTCTCTGTGCTGGTCCTCCTGAGGAAAGTTTTTAAAAGAATCCAGAATA
TTCGATAGTTGATTAGTTTATATAAAAAAGCACCAGGGTGAATATCCAGTCAGGCAAGAC
CGCCCCTGCCTTGCTAGCCCTGATCAGGGTACCAGCAGGGTATTAAGCTTCCGCACTGGC
CCCACTCAACGCCCAGGTTCCATTTTCCCGGGAGAGGGGCTGGGGAGGGCAAGACAGGGC
TGTGCCAGCTGAAGAGAGGAAGGCAGCCAGCAACCCCAACAACCCACCAGGTCTTCCCAT
CAAGAGGGATCAAAGTGTTGGTCACTGTCCATGGGCCCAACCCAAGTCCCAGAGTCTGTC
CAGGCTCCCCTAGTGCACACAGTTTAACGCAACCTCCTGCTCCAGGCAGTTACCTCGCAG
CCTTTGTCCATACCCATTCCGGGCGCTCTGCCAATGCCCGCCCTGCCAGTGTTTGCCCCC
CACCCCCCGGGAGACTGTTCCCAGCCCCTGCGGATCTCAGTGGTCTCTTGGCCACTGCAT
TGTCTGAACTTGCACTCTTTGTACACATCACATGCTGCCTGAGTCCCATGTACATCTGAC
TTCTGCCTCTCGTTTTGTAAGTTCTTTGAGGGCGGATAACCATATCTTGTACTTCTCTTG
TATTCTCCATTGCACCTGGTGCAGTGCTGGGCACAGAGTAGGTGCTCAATAAAAACTTGT
TGAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTCGGTGAAGAGGAGGGGGGACCTCTCCCTGCGGCCGGAGGATGGCGTGTGGGCGCTG
CGCCTCTCCTCCTCTGGCATCTGGGCCAACACCAGACCCGAGGCCGAGCTCTTCCCGGCA
CAGCGGCCCCGGAGGGTGGGCATCGCCCTGGATTACGAAGGGGGCACCGTGACTTTCACC
AACGCAGAGTCGCAAGAACTCATCTATACCTTCAAGGCCACCTTCACCCGGCGTCTGCTC
CCCTTCCTGTGGCTCAGGTGGCCGGGAACACGCCTCCTGCTGAGACCCTGAGCCCCGACT
CTGCTCCCGGCTCCACCCCCACCGATGCCTCAGGTCTCTGGGCTCTGACAGGGGAGGAGA
GGCCAATGGAGCACCTGGAGCAGGCAAGGGGAGGAACCCCCAGTCGGCCGCCACTCCCTC
CTTGTGGCTGTAGCCCCCTTGGGACCTCACCCAGTGCTATTCCCTCTGTCCAGCCCTCTT
CTCCTGCCTCCGGAGGTTCCTGTGCGGACTTCCAACCCTGAAGTCCATGAGGGCTCCTCC
CTCCTGCCCACTGCCTTCAACCCAACCCCAGCCTCTCCTTGGCGAGCAGAGGCAAGGCAG
CATTTTCTTGCCCCCCTGTTCTTGGGAAAGACCAAACTGGTCTTTGGTCTTGGTACACCC
AAGGCCATTTTTCTGTCCTCCAATCCCATGACTTCCCCTTTGCCCAAATCTGCTTCTTTA
CCTGCCTTCCCTGGCCCTTTAAACACACCTGCTGCCGCCCTGACTCAGAGTTAAAGGCAC
ATGGAAATGTTGGACATGAACTGAGTGGCAGTCCACTGAGACTTCCCAGGCCGTTTAAGG
TGCCTGGGGCCAGTGGAAAGCATCTGCTCAGAAGGTCCAGAGAGGAGTCCCTGCTTCTCT
GGGACCCAAGCTGAGCATGTGAGGTTTCCGGCACGAGGAGGTGGGACTCCCTGAAGCCAC
CTGTGGTCTAAGAGGAAGGATCTGGATACATGTGGTGTTAGGGTAGTTGTGATCGGTGAT
CAATAAATTATCTCTCTGTGCTGGTCCTCCTGAGGAAAGTTTTTAAAAGAATCCAGAATA
TTCGATAGTTGATTAGTTTATATAAAAAAGCACCAGGGTGAATATCCAGTCAGGCAAGAC
CGCCCCTGCCTTGCTAGCCCTGATCAGGGTACCAGCAGGGTATTAAGCTTCCGCACTGGC
CCCACTCAACGCCCAGGTTCCATTTTCCCGGGAGAGGGGCTGGGGAGGGCAAGACAGGGC
TGTGCCAGCTGAAGAGAGGAAGGCAGCCAGCAACCCCAACAACCCACCAGGTCTTCCCAT
CAAGAGGGATCAAAGTGTTGGTCACTGTCCATGGGCCCAACCCAAGTCCCAGAGTCTGTC
CAGGCTCCCCTAGTGCACACAGTTTAACGCAACCTCCTGCTCCAGGCAGTTACCTCGCAG
CCTTTGTCCATACCCATTCCGGGCGCTCTGCCAATGCCCGCCCTGCCAGTGTTTGCCCCC
CACCCCCCGGGAGACTGTTCCCAGCCCCTGCGGATCTCAGTGGTCTCTTGGCCACTGCAT
TGTCTGAACTTGCACTCTTTGTACACATCACATGCTGCCTGAGTCCCATGTACATCTGAC
TTCTGCCTCTCGTTTTGTAAGTTCTTTGAGGGCGGATAACCATATCTTGTACTTCTCTTG
TATTCTCCATTGCACCTGGTGCAGTGCTGGGCACAGAGTAGGTGCTCAATAAAAACTTGT
TGAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-239, - strand, RNAz p=0.664983
               

               
               824-1055, + strand, RNAz p=0.999818

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.664983
               

               
               824-1055, + strand, RNAz p=0.999818

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               943-1021, + strand, RNAmicro p=0.999044

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               943-1021, + strand, RNAmicro p=0.999044

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_003449, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_003449, +

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               1-790, gnl|bosTau2|chr23 (23871614-23872394)
               

               
               1-790, gnl|Hg17|chr6 (30261922-30261098)
               

               
               1-790, gnl|Mm7|chr17 (35009643-35010518)
               


               
               824-1259, gnl|bosTau2|chr23 (23872394-23872814)
               

               
               824-1259, gnl|Hg17|chr6 (30261098-30260658)
               


               
               1276-1748, gnl|bosTau2|chr23 (23872798-23873276)
               

               
               1276-1748, gnl|Hg17|chr6 (30260685-30260211)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-790, gnl|bosTau2|chr23 (23871614-23872394)
               

               
               1-790, gnl|Hg17|chr6 (30261922-30261098)
               

               
               1-790, gnl|Mm7|chr17 (35009643-35010518)
               


               
               824-1259, gnl|bosTau2|chr23 (23872394-23872814)
               

               
               824-1259, gnl|Hg17|chr6 (30261098-30260658)
               


               
               1276-1748, gnl|bosTau2|chr23 (23872798-23873276)
               

               
               1276-1748, gnl|Hg17|chr6 (30260685-30260211)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cag (0.302389)
               

               
               ill (0.175593)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.302389)
               

               
               ill (0.175593)
               

               
               lnt (0.142308)
               

               
               ute (0.132784)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	120-239, - strand, RNAz p=0.664983
	824-1055, + strand, RNAz p=0.999818

	1-790, gnl\|bosTau2\|chr23 (23871614-23872394)
	1-790, gnl\|Hg17\|chr6 (30261922-30261098)
	1-790, gnl\|Mm7\|chr17 (35009643-35010518)

	824-1259, gnl\|bosTau2\|chr23 (23872394-23872814)
	824-1259, gnl\|Hg17\|chr6 (30261098-30260658)

	1276-1748, gnl\|bosTau2\|chr23 (23872798-23873276)
	1276-1748, gnl\|Hg17\|chr6 (30260685-30260211)

	cag (0.302389)
	ill (0.175593)
	lnt (0.142308)
	ute (0.132784)
	cbl (0.114797)
	nbm (0.0993246)
	jej (0.0989218)