Ss1.1-rcbl0_003517.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAATTCAGGAAAGAAATCGAAACCCTCAAGCAGGCAGCAGCTCAGAAGTCCCAGCAGCTT TCAGCATTGCAAGAGGAGAACGTGAAACTTGCCGAGGAGCTGGGGAGAAGCAGGGACGAA GTCACAAGTCACCAGAAGCTGGAAGAAGAGAGATCTGTGCTCAATAATCAGTTGTTAGAA ATGAAAAAGAGAGAATCCAAGTTAATAAAAGACGCAGATGAAGAAAAAGCTTCCTTGCAG AAATCCATCAGTATTACTAGTGCCTTACTCACAGAAAAGGATGCAGAGCTGGAAAAACTG AGAAATGAGGTCACGGTGCTCAGGGGAGAGAACGCCTCTGCCAAGTCCTTGCATTCAGTT GTTCAGTCTCTAGAGTCTGATAAGGTGAAGCTTGAGCTCAAGGTAAAGAACTTGGAGCTT CAACTCAAAGAAAACAAGAGGCAGCTCAGCAGCTCCTCAGGTAATACTGATACTCAGGCA GAAGAGGATGAAAGAGCCCAGGAGAGTCAGCAAATGATCGATTTCCTAAATTCAGTAATA GTGGACCTTCAGAGGAAGAATCAGGACCTCAAGATGAAGGTGGAGATGATGTCGGAAGCA GCTCTGAATGGGAACGGCGACGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAATTCAGGAAAGAAATCGAAACCCTCAAGCAGGCAGCAGCTCAGAAGTCCCAGCAGCTT TCAGCATTGCAAGAGGAGAACGTGAAACTTGCCGAGGAGCTGGGGAGAAGCAGGGACGAA GTCACAAGTCACCAGAAGCTGGAAGAAGAGAGATCTGTGCTCAATAATCAGTTGTTAGAA ATGAAAAAGAGAGAATCCAAGTTAATAAAAGACGCAGATGAAGAAAAAGCTTCCTTGCAG AAATCCATCAGTATTACTAGTGCCTTACTCACAGAAAAGGATGCAGAGCTGGAAAAACTG AGAAATGAGGTCACGGTGCTCAGGGGAGAGAACGCCTCTGCCAAGTCCTTGCATTCAGTT GTTCAGTCTCTAGAGTCTGATAAGGTGAAGCTTGAGCTCAAGGTAAAGAACTTGGAGCTT CAACTCAAAGAAAACAAGAGGCAGCTCAGCAGCTCCTCAGGTAATACTGATACTCAGGCA GAAGAGGATGAAAGAGCCCAGGAGAGTCAGCAAATGATCGATTTCCTAAATTCAGTAATA GTGGACCTTCAGAGGAAGAATCAGGACCTCAAGATGAAGGTGGAGATGATGTCGGAAGCA GCTCTGAATGGGAACGGCGACGAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 347-464, - strand, RNAz p=0.996599 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 347-464, - strand, RNAz p=0.996599 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 19-138, gnl|bosTau2|chr17 (29000944-29001063) | |
| 19-138, gnl|canFam2|chr26 (10076735-10076608) | |
| 19-138, gnl|dasNov1|scaffold_3716 (93628-93501) | |
| 19-138, gnl|Hg17|chr12 (121319308-121319189) | |
| 19-138, gnl|hg17|chr4 (131857577-131857705) | |
| 19-138, gnl|loxAfr1|scaffold_2019 (75091-75214) | |
| 19-138, gnl|mm7|chr5 (122849445-122849572) | |
| 19-138, gnl|Mm7|chr5 (122849562-122849443) | |
| 19-138, gnl|oryCun1|scaffold_212334 (57588-57460) | |
| 19-138, gnl|panTro1|chr10 (124383923-124384034) | |
| 19-138, gnl|rheMac2|chr5 (122908365-122908493) | |
| 19-138, gnl|rn3|chr12 (33992759-33992632) | |
| 308-464, gnl|bosTau2|chr17 (29022765-29022921) | |
| 308-464, gnl|Hg17|chr12 (121288371-121288215) | |
| 308-464, gnl|Mm7|chr5 (122829280-122829124) | |
| 516-624, gnl|bosTau2|chr17 (29025736-29025844) | |
| 516-624, gnl|canFam2|chr26 (10102597-10102441) | |
| 516-624, gnl|danRer3|chr21 (30925747-30925606) | |
| 516-624, gnl|dasNov1|scaffold_18630 (55493-55333) | |
| 516-624, gnl|echTel1|scaffold_318955 (52744-52906) | |
| 516-624, gnl|fr1|chrUn (48558843-48558711) | |
| 516-624, gnl|galGal2|chr15 (5767913-5768059) | |
| 516-624, gnl|hg17|chr12 (121283453-121283608) | |
| 516-624, gnl|Hg17|chr12 (121283590-121283482) | |
| 516-624, gnl|loxAfr1|scaffold_2019 (52628-52800) | |
| 516-624, gnl|mm7|chr5 (122825831-122825989) | |
| 516-624, gnl|Mm7|chr5 (122825969-122825861) | |
| 516-624, gnl|monDom2|scaffold_97 (2564561-2564718) | |
| 516-624, gnl|oryCun1|scaffold_181632 (15811-15668) | |
| 516-624, gnl|panTro1|chr10 (124347243-124347398) | |
| 516-624, gnl|rheMac2|chr11 (123520396-123520551) | |
| 516-624, gnl|rn3|chr12 (34017671-34017516) | |
| 516-624, gnl|tetNig1|chr12 (7031814-7031682) | |
| 516-624, gnl|xenTro1|scaffold_791 (503278-503437) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 19-138, gnl|bosTau2|chr17 (29000944-29001063) | |
| 19-138, gnl|canFam2|chr26 (10076735-10076608) | |
| 19-138, gnl|dasNov1|scaffold_3716 (93628-93501) | |
| 19-138, gnl|Hg17|chr12 (121319308-121319189) | |
| 19-138, gnl|hg17|chr4 (131857577-131857705) | |
| 19-138, gnl|loxAfr1|scaffold_2019 (75091-75214) | |
| 19-138, gnl|mm7|chr5 (122849445-122849572) | |
| 19-138, gnl|Mm7|chr5 (122849562-122849443) | |
| 19-138, gnl|oryCun1|scaffold_212334 (57588-57460) | |
| 19-138, gnl|panTro1|chr10 (124383923-124384034) | |
| 19-138, gnl|rheMac2|chr5 (122908365-122908493) | |
| 19-138, gnl|rn3|chr12 (33992759-33992632) | |
| 308-464, gnl|bosTau2|chr17 (29022765-29022921) | |
| 308-464, gnl|Hg17|chr12 (121288371-121288215) | |
| 308-464, gnl|Mm7|chr5 (122829280-122829124) | |
| 516-624, gnl|bosTau2|chr17 (29025736-29025844) | |
| 516-624, gnl|canFam2|chr26 (10102597-10102441) | |
| 516-624, gnl|danRer3|chr21 (30925747-30925606) | |
| 516-624, gnl|dasNov1|scaffold_18630 (55493-55333) | |
| 516-624, gnl|echTel1|scaffold_318955 (52744-52906) | |
| 516-624, gnl|fr1|chrUn (48558843-48558711) | |
| 516-624, gnl|galGal2|chr15 (5767913-5768059) | |
| 516-624, gnl|hg17|chr12 (121283453-121283608) | |
| 516-624, gnl|Hg17|chr12 (121283590-121283482) | |
| 516-624, gnl|loxAfr1|scaffold_2019 (52628-52800) | |
| 516-624, gnl|mm7|chr5 (122825831-122825989) | |
| 516-624, gnl|Mm7|chr5 (122825969-122825861) | |
| 516-624, gnl|monDom2|scaffold_97 (2564561-2564718) | |
| 516-624, gnl|oryCun1|scaffold_181632 (15811-15668) | |
| 516-624, gnl|panTro1|chr10 (124347243-124347398) | |
| 516-624, gnl|rheMac2|chr11 (123520396-123520551) | |
| 516-624, gnl|rn3|chr12 (34017671-34017516) | |
| 516-624, gnl|tetNig1|chr12 (7031814-7031682) | |
| 516-624, gnl|xenTro1|scaffold_791 (503278-503437) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.45919) |