Non-Coding RNA Search

Ss1.1-rcbl0_003610.5

Sequence:


               
               TATATACAGTCTCGACAAGCACTAAATTCTGTAGTTAAAATTACATCCAAAAAAAAACAT
CCTGAGTTAATTACCTTCAAGTATGGAAACAGCAGTGCTTCAGGAATAGAAATCTTGGCA
ATTGAAAGGTATTTGATTCCAAATGCAGGAGATGCCACCAAAGCCATAAAACAACAGATC
ATGAAAGTTTTGGATGCTTTGGAAAGTTAATATAAAAGAAAATTATTTCAGAAGAAATTA
AGGCAACCAAGAGAAATGTAGACATATTTTCCTGACTGAATACTAACCGGAGACTTTGAT
TTGCTTATGGGGTGCTTGAATAGCAAGTCTAAGAAAGTGTAAATTATTATAATCAATCTC
TGGACAGTTTAAAAGTTTTTTAAATTTACTTTTGCATTTTCAGTTTTGTAAAATGATTTC
TTATAAAGGTCAGTTATTAAATGACTTTGAAGTCACTGACCCCATGCCCTTATGCACTTA
GGGTGCAAAATGCAGTTCTGTTTTGAAGAGCTGTTTTAAGGGAACATGCATCACTTTCAG
ATTTAAAACAACCATACACATATATATTTGCAATGTCTTCACTGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATATACAGTCTCGACAAGCACTAAATTCTGTAGTTAAAATTACATCCAAAAAAAAACAT
CCTGAGTTAATTACCTTCAAGTATGGAAACAGCAGTGCTTCAGGAATAGAAATCTTGGCA
ATTGAAAGGTATTTGATTCCAAATGCAGGAGATGCCACCAAAGCCATAAAACAACAGATC
ATGAAAGTTTTGGATGCTTTGGAAAGTTAATATAAAAGAAAATTATTTCAGAAGAAATTA
AGGCAACCAAGAGAAATGTAGACATATTTTCCTGACTGAATACTAACCGGAGACTTTGAT
TTGCTTATGGGGTGCTTGAATAGCAAGTCTAAGAAAGTGTAAATTATTATAATCAATCTC
TGGACAGTTTAAAAGTTTTTTAAATTTACTTTTGCATTTTCAGTTTTGTAAAATGATTTC
TTATAAAGGTCAGTTATTAAATGACTTTGAAGTCACTGACCCCATGCCCTTATGCACTTA
GGGTGCAAAATGCAGTTCTGTTTTGAAGAGCTGTTTTAAGGGAACATGCATCACTTTCAG
ATTTAAAACAACCATACACATATATATTTGCAATGTCTTCACTGAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61866316|ref|XP_612120.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61866316|ref|XP_612120.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               127-245, - strand, RNAz p=0.843268
               

               
               403-557, + strand, RNAz p=0.968812

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               127-245, - strand, RNAz p=0.843268
               

               
               403-557, + strand, RNAz p=0.968812

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC010221, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC010221, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               127-588, gnl|bosTau2|chr1 (24173500-24173962)
               

               
               127-588, gnl|Hg17|chr3 (101525119-101525586)
               

               
               127-588, gnl|Mm7|chr16 (57027866-57027409)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               127-588, gnl|bosTau2|chr1 (24173500-24173962)
               

               
               127-588, gnl|Hg17|chr3 (101525119-101525586)
               

               
               127-588, gnl|Mm7|chr16 (57027866-57027409)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cbl (0.344392)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)
               

               
               pgl (0.118483)

	127-245, - strand, RNAz p=0.843268
	403-557, + strand, RNAz p=0.968812

	127-588, gnl\|bosTau2\|chr1 (24173500-24173962)
	127-588, gnl\|Hg17\|chr3 (101525119-101525586)
	127-588, gnl\|Mm7\|chr16 (57027866-57027409)