Non-Coding RNA Search

Ss1.1-rcbl0_003640.5

Sequence:


               
               TACCGCAAACGGAAAGTTGAAAAGCATGTTAAACCTCACTTTCGTCAAATCAAACAAAAA
CCTTCACTGGGTAGCAAAACTGAAATGTTTCTAGTGGCAGGCATGGTAACGTAAACCCAT
TTTACCACTCTGAAGGCACTAGCCTCCTCCCCCCCCCACAATCCTTTTACAAGCACTTAT
ATTTAATTGCATTTTCCACAGGTCTGACTAGTGCTAATAAATCTTCTGGATTTCAGAATA
AGGCAGAATAGAACCTTAAAGACCTTGGTATGATTCTTCCATGGTTGGAGATTCCCTTTA
AATTTGACATTTTTTTTAGCTGACCAACTTTCACACTGAGAAACCAGGCAGCAATCGTAA
GATAAAGCCATGGTACTTTTCTTCTATGACAATTTATCAGTATCTTGCCAATGAGCCTTA
AGATTTTTATATAGCTCCAATATTAAGCGTTTACTTAAAACTTAGAAATCTTTCCTTTTT
GGATACAGTACCAACTCTTCAGTCAAAAAGTAAATGAATCTTCTAGACTATTTTATATTG
TACATATTTCTTCCCATTGGCTATTAAAAAGAAATTTAAATTCAGGTATCTTTTATAATA
CAACATTTTAGATTTGTGTACTCATTGGCAAAACAGTGAAATTTCCAATTCCTTTACCAG
TACAGATAATGAATGCATCATTGAGAACGGGAGAGAGATAATGTGGTCTTCATATTTTAG
ACATGGAATATGGCTATTTTTCTTAGAGCCATGTTTGGACAGATGGTACATTTTGAACAG
CCTTAATTTTGGCAACCACTAGCAAAATGATCTTATCAGAATAATTTAATAAAAGCTTCC
CCCACTGCCTCATCTTTTAAAATAACTGATTCAATCTCAAGGACTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACCGCAAACGGAAAGTTGAAAAGCATGTTAAACCTCACTTTCGTCAAATCAAACAAAAA
CCTTCACTGGGTAGCAAAACTGAAATGTTTCTAGTGGCAGGCATGGTAACGTAAACCCAT
TTTACCACTCTGAAGGCACTAGCCTCCTCCCCCCCCCACAATCCTTTTACAAGCACTTAT
ATTTAATTGCATTTTCCACAGGTCTGACTAGTGCTAATAAATCTTCTGGATTTCAGAATA
AGGCAGAATAGAACCTTAAAGACCTTGGTATGATTCTTCCATGGTTGGAGATTCCCTTTA
AATTTGACATTTTTTTTAGCTGACCAACTTTCACACTGAGAAACCAGGCAGCAATCGTAA
GATAAAGCCATGGTACTTTTCTTCTATGACAATTTATCAGTATCTTGCCAATGAGCCTTA
AGATTTTTATATAGCTCCAATATTAAGCGTTTACTTAAAACTTAGAAATCTTTCCTTTTT
GGATACAGTACCAACTCTTCAGTCAAAAAGTAAATGAATCTTCTAGACTATTTTATATTG
TACATATTTCTTCCCATTGGCTATTAAAAAGAAATTTAAATTCAGGTATCTTTTATAATA
CAACATTTTAGATTTGTGTACTCATTGGCAAAACAGTGAAATTTCCAATTCCTTTACCAG
TACAGATAATGAATGCATCATTGAGAACGGGAGAGAGATAATGTGGTCTTCATATTTTAG
ACATGGAATATGGCTATTTTTCTTAGAGCCATGTTTGGACAGATGGTACATTTTGAACAG
CCTTAATTTTGGCAACCACTAGCAAAATGATCTTATCAGAATAATTTAATAAAAGCTTCC
CCCACTGCCTCATCTTTTAAAATAACTGATTCAATCTCAAGGACTATT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               659-817, - strand, RNAz p=0.858541

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               659-817, - strand, RNAz p=0.858541

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-888, gnl|bosTau2|chr23 (29726222-29725360)
               

               
               1-888, gnl|canFam2|chr35 (20031485-20032093)
               

               
               1-888, gnl|dasNov1|scaffold_43879 (4146-3482)
               

               
               1-888, gnl|echTel1|scaffold_101463 (2703-2069)
               

               
               1-888, gnl|hg17|chr6 (18330207-18330877)
               

               
               1-888, gnl|Hg17|chr6 (18330230-18331094)
               

               
               1-888, gnl|loxAfr1|scaffold_61929 (4795-4119)
               

               
               1-888, gnl|mm7|chr13 (46565062-46565664)
               

               
               1-888, gnl|Mm7|chr13 (46565086-46565827)
               

               
               1-888, gnl|monDom2|scaffold_3 (107342531-107343223)
               

               
               1-888, gnl|oryCun1|scaffold_198707 (7347-7970)
               

               
               1-888, gnl|panTro1|chr5 (18701663-18702332)
               

               
               1-888, gnl|rheMac2|chr4 (18267725-18268396)
               

               
               1-888, gnl|rn3|chr17 (23657300-23656684)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-888, gnl|bosTau2|chr23 (29726222-29725360)
               

               
               1-888, gnl|canFam2|chr35 (20031485-20032093)
               

               
               1-888, gnl|dasNov1|scaffold_43879 (4146-3482)
               

               
               1-888, gnl|echTel1|scaffold_101463 (2703-2069)
               

               
               1-888, gnl|hg17|chr6 (18330207-18330877)
               

               
               1-888, gnl|Hg17|chr6 (18330230-18331094)
               

               
               1-888, gnl|loxAfr1|scaffold_61929 (4795-4119)
               

               
               1-888, gnl|mm7|chr13 (46565062-46565664)
               

               
               1-888, gnl|Mm7|chr13 (46565086-46565827)
               

               
               1-888, gnl|monDom2|scaffold_3 (107342531-107343223)
               

               
               1-888, gnl|oryCun1|scaffold_198707 (7347-7970)
               

               
               1-888, gnl|panTro1|chr5 (18701663-18702332)
               

               
               1-888, gnl|rheMac2|chr4 (18267725-18268396)
               

               
               1-888, gnl|rn3|chr17 (23657300-23656684)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cbl (0.45919)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.45919)

	1-888, gnl\|bosTau2\|chr23 (29726222-29725360)
	1-888, gnl\|canFam2\|chr35 (20031485-20032093)
	1-888, gnl\|dasNov1\|scaffold_43879 (4146-3482)
	1-888, gnl\|echTel1\|scaffold_101463 (2703-2069)
	1-888, gnl\|hg17\|chr6 (18330207-18330877)
	1-888, gnl\|Hg17\|chr6 (18330230-18331094)
	1-888, gnl\|loxAfr1\|scaffold_61929 (4795-4119)
	1-888, gnl\|mm7\|chr13 (46565062-46565664)
	1-888, gnl\|Mm7\|chr13 (46565086-46565827)
	1-888, gnl\|monDom2\|scaffold_3 (107342531-107343223)
	1-888, gnl\|oryCun1\|scaffold_198707 (7347-7970)
	1-888, gnl\|panTro1\|chr5 (18701663-18702332)
	1-888, gnl\|rheMac2\|chr4 (18267725-18268396)
	1-888, gnl\|rn3\|chr17 (23657300-23656684)