Non-Coding RNA Search

Ss1.1-rcbl0_004457.5

Sequence:


               
               CTGTTGTACAACATCTACAACTTCAAGAGTCTCAGCAGCCAACCAGTCAAGCCCAAATTG
TGCAAGGTATTACACCACAGACAATCCATGGTGTGCAAGCCGGTGGTCAAAATATATCAC
AACAAGCTTTGCAAAATCTTCAGTTGCAGCTGAATCCTGGAACCTTTTTAATTCAGGCAC
AGACAGTGACCCCTTCTGGACAGATAACCTGGCAGACATTTCAAGTGCAAGGGGTCCAGA
ACTTGCAGAATTTGCAAATACAGAATACTGCTGCCCAACAAATAACTTTGACGCCTGTTC
AGACACTCACGCTTGGTCAAGTTGCAGCAGGTGGAGCCTTGACTTCAACTCCAGTTAGTC
TAAGCACTGGTCAGTTGCCAAATCTACAGACAGTTACAGTAAACTCTATAGATTCTACTG
GTATACAGCTACACCCAGGAGAGAATGCTGACAGTCCTGCAGATATTAGGATCAAGGAAG
AAGAACCTGATCCTGAAGAGTGGCAGCTCAGTGGTGATTCTACATTGAATACCAATGATC
TAACACATTTAAGAGTACAGGTGGTAGATGAAGAAGGGGACCAACAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTTGTACAACATCTACAACTTCAAGAGTCTCAGCAGCCAACCAGTCAAGCCCAAATTG
TGCAAGGTATTACACCACAGACAATCCATGGTGTGCAAGCCGGTGGTCAAAATATATCAC
AACAAGCTTTGCAAAATCTTCAGTTGCAGCTGAATCCTGGAACCTTTTTAATTCAGGCAC
AGACAGTGACCCCTTCTGGACAGATAACCTGGCAGACATTTCAAGTGCAAGGGGTCCAGA
ACTTGCAGAATTTGCAAATACAGAATACTGCTGCCCAACAAATAACTTTGACGCCTGTTC
AGACACTCACGCTTGGTCAAGTTGCAGCAGGTGGAGCCTTGACTTCAACTCCAGTTAGTC
TAAGCACTGGTCAGTTGCCAAATCTACAGACAGTTACAGTAAACTCTATAGATTCTACTG
GTATACAGCTACACCCAGGAGAGAATGCTGACAGTCCTGCAGATATTAGGATCAAGGAAG
AAGAACCTGATCCTGAAGAGTGGCAGCTCAGTGGTGATTCTACATTGAATACCAATGATC
TAACACATTTAAGAGTACAGGTGGTAGATGAAGAAGGGGACCAACAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62645053|ref|XP_575127.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62645053|ref|XP_575127.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-280, - strand, RNAz p=0.85292

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-280, - strand, RNAz p=0.85292

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-462, gnl|bosTau2|chr2 (13947150-13946689)
               

               
               1-462, gnl|Hg17|chr2 (174645569-174645108)
               

               
               1-462, gnl|Mm7|chr2 (72814332-72813871)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-462, gnl|bosTau2|chr2 (13947150-13946689)
               

               
               1-462, gnl|Hg17|chr2 (174645569-174645108)
               

               
               1-462, gnl|Mm7|chr2 (72814332-72813871)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.229595)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)

	1-462, gnl\|bosTau2\|chr2 (13947150-13946689)
	1-462, gnl\|Hg17\|chr2 (174645569-174645108)
	1-462, gnl\|Mm7\|chr2 (72814332-72813871)