Non-Coding RNA Search

Ss1.1-rcbl0_004480.5

Sequence:


               
               GAAAAACCCAAAGATTGCCACAAGAGAAGAAAATGCAAGTAAGTCAATGCTGTGTCAAGA
GGTGTATTTGAAATATTAGCACATAAATATGTTGAAGTAAAAGAAAGAGAAAAAGTTGTG
CAAACAGTAACATGAGAATGTTACATAGCTATCTTAATTCCAGATAGCTGGAATTTAAAG
TAGAGTTTAAGTAAAAAAATAATAACATTTTAAGTGGGCCATTTCATAGTGATAAAGCCA
CATGAACATTTTTATCATTTCTTCTAGATTTGTTGACATACAGTGTAACATTATGTAAAT
AATTATTTTTCTTTACTTTTCTGTTACAGACTATTGAGTTATAGAATAGAGTTGTTGAGG
AAAAATTATTAATTGGAAAAAAACAAAAACAAAAACCCCAAACCCCCAGATCCTGTCTTG
CCAGAGGTTAGGGGAAGGTGATGATAAGTCATGGTTGGTTGATAAAGAGTTATTGTTGTG
TGCACCTGAAAAATAGGAAGTGAAACTGAAAGTCAGGATGAAAAGTTGTTGCCGCAGAAC
CGAAGGCTTGGAATGGAGACGATGAACATTGAAGATGTTGGCAATAGTGGAGTTTGGGAC
AGTCCATGGGAATAAACAGCTGAAGCAGAGTGAAGGACGGATGGAGGTCAAGTTACTGAG
AACCGGAGTGATGAGAAGAATTAGAAAAAAATAGATGGAGGAGGATGAACAGAATTAGAA
AGATCACTACCTTGCAAGCTCTAAGGAAATCATGGTTTTAGGAAGCAATGAATGGAAACT
GAAATTATTGATGGAAACAGTGGCTGTCTCCCAATTATCATTCTTCCCTTGCTAATGTGG
GACAGACAGATCTCATGTGCTGCCCACTGTGCTGTCACCGGCAATGCAGAACCCTACCCC
AAAACAGTCTGAAGGAAGTTGAACCAGAATGTAATCCAGCCTCTAGATCAACTACCAGCT
TATGTAGATCTAAGGGGTAGATTCACATTTCAACTGAAAACACGATTAGCCAAAGCCAGA
ATGTGGGCAATTCTCCAGGAAAGAAGATGGTGCATTGTCTATAACAATTAAAAGATATGA
CCCAACCTGGAGAGCTAATATAGGCATACCTCTGAGCTATTGCTGGCAATCGAGATTATG
GCCATAAAGGGAGCCACACATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAACCCAAAGATTGCCACAAGAGAAGAAAATGCAAGTAAGTCAATGCTGTGTCAAGA
GGTGTATTTGAAATATTAGCACATAAATATGTTGAAGTAAAAGAAAGAGAAAAAGTTGTG
CAAACAGTAACATGAGAATGTTACATAGCTATCTTAATTCCAGATAGCTGGAATTTAAAG
TAGAGTTTAAGTAAAAAAATAATAACATTTTAAGTGGGCCATTTCATAGTGATAAAGCCA
CATGAACATTTTTATCATTTCTTCTAGATTTGTTGACATACAGTGTAACATTATGTAAAT
AATTATTTTTCTTTACTTTTCTGTTACAGACTATTGAGTTATAGAATAGAGTTGTTGAGG
AAAAATTATTAATTGGAAAAAAACAAAAACAAAAACCCCAAACCCCCAGATCCTGTCTTG
CCAGAGGTTAGGGGAAGGTGATGATAAGTCATGGTTGGTTGATAAAGAGTTATTGTTGTG
TGCACCTGAAAAATAGGAAGTGAAACTGAAAGTCAGGATGAAAAGTTGTTGCCGCAGAAC
CGAAGGCTTGGAATGGAGACGATGAACATTGAAGATGTTGGCAATAGTGGAGTTTGGGAC
AGTCCATGGGAATAAACAGCTGAAGCAGAGTGAAGGACGGATGGAGGTCAAGTTACTGAG
AACCGGAGTGATGAGAAGAATTAGAAAAAAATAGATGGAGGAGGATGAACAGAATTAGAA
AGATCACTACCTTGCAAGCTCTAAGGAAATCATGGTTTTAGGAAGCAATGAATGGAAACT
GAAATTATTGATGGAAACAGTGGCTGTCTCCCAATTATCATTCTTCCCTTGCTAATGTGG
GACAGACAGATCTCATGTGCTGCCCACTGTGCTGTCACCGGCAATGCAGAACCCTACCCC
AAAACAGTCTGAAGGAAGTTGAACCAGAATGTAATCCAGCCTCTAGATCAACTACCAGCT
TATGTAGATCTAAGGGGTAGATTCACATTTCAACTGAAAACACGATTAGCCAAAGCCAGA
ATGTGGGCAATTCTCCAGGAAAGAAGATGGTGCATTGTCTATAACAATTAAAAGATATGA
CCCAACCTGGAGAGCTAATATAGGCATACCTCTGAGCTATTGCTGGCAATCGAGATTATG
GCCATAAAGGGAGCCACACATTTT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               412-1084, gnl|bosTau2|chr3 (68729814-68730495)
               


               
               481-1012, gnl|bosTau2|chr3 (68691374-68691924)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               412-1084, gnl|bosTau2|chr3 (68729814-68730495)
               


               
               481-1012, gnl|bosTau2|chr3 (68691374-68691924)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               cbl (0.344392)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               nco (0.161734)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               nco (0.161734)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	412-1084, gnl\|bosTau2\|chr3 (68729814-68730495)

	481-1012, gnl\|bosTau2\|chr3 (68691374-68691924)

	cbl (0.344392)
	sto (0.179824)
	ill (0.175593)
	nco (0.161734)
	liv (0.146284)
	spl (0.143184)
	med (0.116252)
	jca (0.11396)