Non-Coding RNA Search

Ss1.1-rcbl0_005035.5

Sequence:


               
               CAAATTGCCAATTCTGCTCCAGTAAAAGACAACAAGATTTTTCCCAATGGACTCTCTAGC
AAAATCTATCAACCAATTTGCTGTGGAGTTTAGCAAAAAGTTAGCTGAAGCTGCTGATGG
TAAAAATATCTTCTTTTCTCCCTGGGGCATCTCAACCTCCTTGGCCATGGTGTATTTGGG
CACCAAAGGTACCACTGCAACCCAAATGGCCCAGGTTCTTCAATTTAGCAGAGACCAGGA
CAGCAAATCTTATCCTGACAGTGAAAAGAAAAGGAGAATGGAATTCAACATGGACAATGT
TGAAGAAATACACTCTGATTTCCAGGCACTTATCTCAGAAATCAACAATTCCAGCAATGC
TTGCATACTTAAAACAGCCAATAGGATCTATGGGGAGAAAACATATCCATTTTGCAATAA
ATATTTAGAAGACATGAAAACATACTTTGGTGCAGAGCCACAGTCTGTGAACTTTATGGA
AGCTTCTGGCCAAATCAGAAAGGAGATCAACTCTTGGGTTGAAAGCCAGACGGAGGGAAA
AATCCTAAATCTCCTACCTGATGATGCTGTGGATTCTGCAACCAGAATGGTCCTGGTGAA
TGCCCTTTACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAATTGCCAATTCTGCTCCAGTAAAAGACAACAAGATTTTTCCCAATGGACTCTCTAGC
AAAATCTATCAACCAATTTGCTGTGGAGTTTAGCAAAAAGTTAGCTGAAGCTGCTGATGG
TAAAAATATCTTCTTTTCTCCCTGGGGCATCTCAACCTCCTTGGCCATGGTGTATTTGGG
CACCAAAGGTACCACTGCAACCCAAATGGCCCAGGTTCTTCAATTTAGCAGAGACCAGGA
CAGCAAATCTTATCCTGACAGTGAAAAGAAAAGGAGAATGGAATTCAACATGGACAATGT
TGAAGAAATACACTCTGATTTCCAGGCACTTATCTCAGAAATCAACAATTCCAGCAATGC
TTGCATACTTAAAACAGCCAATAGGATCTATGGGGAGAAAACATATCCATTTTGCAATAA
ATATTTAGAAGACATGAAAACATACTTTGGTGCAGAGCCACAGTCTGTGAACTTTATGGA
AGCTTCTGGCCAAATCAGAAAGGAGATCAACTCTTGGGTTGAAAGCCAGACGGAGGGAAA
AATCCTAAATCTCCTACCTGATGATGCTGTGGATTCTGCAACCAGAATGGTCCTGGTGAA
TGCCCTTTACTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               41-216, - strand, RNAz p=0.932801

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-216, - strand, RNAz p=0.932801

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               41-216, gnl|bosTau2|chr4 (40318176-40317997)
               

               
               41-216, gnl|Hg17|chr18 (59733719-59733894)
               

               
               41-216, gnl|Mm7|chr1 (107432342-107432518)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-216, gnl|bosTau2|chr4 (40318176-40317997)
               

               
               41-216, gnl|Hg17|chr18 (59733719-59733894)
               

               
               41-216, gnl|Mm7|chr1 (107432342-107432518)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cbl (0.344392)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)

	41-216, gnl\|bosTau2\|chr4 (40318176-40317997)
	41-216, gnl\|Hg17\|chr18 (59733719-59733894)
	41-216, gnl\|Mm7\|chr1 (107432342-107432518)