Non-Coding RNA Search

Ss1.1-rcbl0_005307.5

Sequence:


               
               CAACACCAGATCTGTAACCTGCTGTGCCACAGTAGAACTCCTGAAGCATGCAAATTTATT
AGCAAATATTTCTAAGAATCTTTTTCTTCTAATGCTCTTATCCATTCTCAAAGCAACTTC
ATTTTACTTAAGTTTATAGAACTATAGGAGTTTAGAAAGGATTTCAGGGCGATCTGATTG
TACTTCTTTTTGAAATGAGAAAGTGAGATTCTGAGAAATTAAGCTCTTCTGTGCCACAGG
AGTGAATAGGACCAGTATGTCAGGGTTCCCAAGTCATTGTTCTTTCTGTATATTCTAAGA
CATATGTCTAGTCTGTGATACTTTGTTCCTGTTTTAGTGTGACAAAAATGAGAGCCAGAT
ATATCCAAGGGACATTATTTGTTAGTAGAGCAAGGACTAGAATTCAGATTTTTCTACTTG
TAAAACAATGGTTTTTAATTAAATTGAATTTAAACTAAATTATTCATTAACCATGTTACT
TCATTTATAGTCAATTTGAGAACAATCTCACACTATTTAGAACTATTTCAAACCTCTTTC
GCTTTGAACCTATGATTTATCCTATCTCTTAGCTCATTCTTGGCAAGTAACCTCTTTTAT
AGACTAAATTGTGCCCCCTAACCTAAATTTCATATTTGAAGTTCTAGCCCTTGGTGCCTT
CGAATGTGACTTGACCTGGAGATAGAGTCTTTAAAGTGGTCATTAAGTAAAATTAGGTCA
TGTTAGTGAGGCCTAATCCAATATGATTGATATCTTTATAAGGAGAGAGTAGGACATACA
GAGGAAGGACCACAGGAAGATGAAGAGAAGACGTCCATCTACAAGCCAAGGAGCATTTCC
TCAGAAGAAACGAACCCAGCTGACACCTTGACTTCTGGCTTTTAGAACTGTGATGAAATA
AATTTCTGTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACACCAGATCTGTAACCTGCTGTGCCACAGTAGAACTCCTGAAGCATGCAAATTTATT
AGCAAATATTTCTAAGAATCTTTTTCTTCTAATGCTCTTATCCATTCTCAAAGCAACTTC
ATTTTACTTAAGTTTATAGAACTATAGGAGTTTAGAAAGGATTTCAGGGCGATCTGATTG
TACTTCTTTTTGAAATGAGAAAGTGAGATTCTGAGAAATTAAGCTCTTCTGTGCCACAGG
AGTGAATAGGACCAGTATGTCAGGGTTCCCAAGTCATTGTTCTTTCTGTATATTCTAAGA
CATATGTCTAGTCTGTGATACTTTGTTCCTGTTTTAGTGTGACAAAAATGAGAGCCAGAT
ATATCCAAGGGACATTATTTGTTAGTAGAGCAAGGACTAGAATTCAGATTTTTCTACTTG
TAAAACAATGGTTTTTAATTAAATTGAATTTAAACTAAATTATTCATTAACCATGTTACT
TCATTTATAGTCAATTTGAGAACAATCTCACACTATTTAGAACTATTTCAAACCTCTTTC
GCTTTGAACCTATGATTTATCCTATCTCTTAGCTCATTCTTGGCAAGTAACCTCTTTTAT
AGACTAAATTGTGCCCCCTAACCTAAATTTCATATTTGAAGTTCTAGCCCTTGGTGCCTT
CGAATGTGACTTGACCTGGAGATAGAGTCTTTAAAGTGGTCATTAAGTAAAATTAGGTCA
TGTTAGTGAGGCCTAATCCAATATGATTGATATCTTTATAAGGAGAGAGTAGGACATACA
GAGGAAGGACCACAGGAAGATGAAGAGAAGACGTCCATCTACAAGCCAAGGAGCATTTCC
TCAGAAGAAACGAACCCAGCTGACACCTTGACTTCTGGCTTTTAGAACTGTGATGAAATA
AATTTCTGTTGT

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               432-910, gnl|bosTau2|chr14 (34934674-34934178)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               432-910, gnl|bosTau2|chr14 (34934674-34934178)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               fty (0.17584)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               spc (0.226732)
               

               
               fty (0.17584)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)

	cbe (0.239234)
	spc (0.226732)
	fty (0.17584)
	fco (0.157208)
	bfe (0.149858)
	liv (0.146284)
	lyg (0.133103)
	kid (0.129735)
	ret (0.128733)
	sug (0.127291)
	tra (0.123092)
	cbl (0.114797)