Ss1.1-rcbl0_005344.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTCCATGCCAACCGCAGGGAGTGCCGGCTCTGTTCCTGAAAACCTGAACCTGTTTCCAG AGCCAGGGAGCAAATCAGAAGAAACAGGCAAGAAGCAGCTCTCTAAAGACTCCATCCTCT CACTGTATGGATCCCAGACACCTCAGATGCCTGCCCAAGCAGTGTTCATGGCTCCCGCTC AGATGGCATACCCCACAGCCTACCCCAGCTTTCCTGGGGTTACCACTCCTAACAGCATAA TGGGGGGCATGATGCCCCCACCGGTAGGCATGGTAGCTCAGCCAGGAGCTTCTGGGATGG TGGCCCCCATGGCCATGCCTGCAGGCTATATGGGTGGCATGCAGGCATCTATGATGGGTG TGCCAAATGGAATGATGACCACACAGCAGGCCGGCTACATGGCAGGCATGGCAGCTCTGC CCCAGACGGTGTATGGGGTTCAGCCCGTGCAGCAGCTGCAATGGAACCTCACTCAGATGA CCCAGCAGATGGCTGGGATGAACTTCTGTGGCGCCAACGGCATGCTGAGCTATGGGCAGT CCATGAACGGCGGGAACGGACAGGCGGCAAATCAGACGCTGAGCCCTCAGATGTGGAAAT AAAAACAACACACCTGTACGACGACCACTCTCCCCAGGCCCCTCTCCTGTCTTCCCTTGC TCCCCAACTCCTCCCCCGAAGGCCCTTTCCCTCCTCGCTCTGTTTGATTTAGAAATCGCT CAGTCCATCATCTGGCGCGGGGCGTTCTGCCAGCCCTCGCACGAGGCAAACGCACAGCCC TCTCTGTTGCTTTATGTTGTCCATGTCCCCCAGCCATCCTGACTTCCTCCCAGCCTCAGC CCTGGTCCTCTCCTGGCACCAGCACCTTAGGAATTGTTGGCAGAAGGCATTTCGACTGCA GGATAGATATGCACATTTCAAGTACCTTTCCCACAAGGTTAAGCCTCCTGTCAGACTCAG AAAGGTATGTAGGTGCTGTGTTTTAGGCAAAGAGGCGGTTTACAGGTCCTTCTAAATGTG TTGAGGAGCTGTTTCCATGTGTTTCAATTTGGGGGTAAAAGGGAGGCATCGTGCTGCCCC GATTTGTGGGGACGAGGAAAGGGCTGCCATCAAATTAAATACTCCTTGGGTCTTAGATCA GGTTAGCCCTAGCCCTGGGGCGAGGCAAAACTCCTCCTAAGAGGATGAGCAAAACTATGG CTCTGCTTTGCCCTGAATTGCTCTCTGGGTCTGAGTCTTCAGGACCTGCTGCTTCAGTCG GCCTTTATTAGCACCAAAGACTCAAAGGTCCCACACACAACACACACCCGTCTCCCTGCC TCTATCCTGCCTTTGGGAGGATCTGGCTTTGTGGCTGAAGGACCGGCCCCTCCAGTGGGA ATGCAGAGCTTCACGTGTGTACTGCTTGTGTGTGTATGTGTGGATTCTGCCTCCACTCTC TCCCCATCTGCTCTGGGTATTTTTGTTTTTGTTTTTGCTTTAGCTTTAGGTTTACAACAG AGAGGAGTTAATCTATCCACAGCCTAAAACTGTTGCCAGTTTTACAATCTCATTGGTGGC TCCCTTTCTCCTTTCCCCTCTGCAGTCTGCCAATCGCTCTTTCATGCCTGTGTATCCAGG CTGCTCTGTGTCCCCACCTGTTCCACGAGTATGAGGCAGAGCACCTGGGCAGCTTTCCTC TCAGTCACTGTTCATCCTACTTGAAAATTAAAACAAGAAAACTCTGCTTAAAAAACTTCA TCTATGGGAACCACAACTCCTGGTTGCCTTTCTCCTGTGTATGTGTAAATTCCTTAATAA ATATTGCAGGGAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTCCATGCCAACCGCAGGGAGTGCCGGCTCTGTTCCTGAAAACCTGAACCTGTTTCCAG AGCCAGGGAGCAAATCAGAAGAAACAGGCAAGAAGCAGCTCTCTAAAGACTCCATCCTCT CACTGTATGGATCCCAGACACCTCAGATGCCTGCCCAAGCAGTGTTCATGGCTCCCGCTC AGATGGCATACCCCACAGCCTACCCCAGCTTTCCTGGGGTTACCACTCCTAACAGCATAA TGGGGGGCATGATGCCCCCACCGGTAGGCATGGTAGCTCAGCCAGGAGCTTCTGGGATGG TGGCCCCCATGGCCATGCCTGCAGGCTATATGGGTGGCATGCAGGCATCTATGATGGGTG TGCCAAATGGAATGATGACCACACAGCAGGCCGGCTACATGGCAGGCATGGCAGCTCTGC CCCAGACGGTGTATGGGGTTCAGCCCGTGCAGCAGCTGCAATGGAACCTCACTCAGATGA CCCAGCAGATGGCTGGGATGAACTTCTGTGGCGCCAACGGCATGCTGAGCTATGGGCAGT CCATGAACGGCGGGAACGGACAGGCGGCAAATCAGACGCTGAGCCCTCAGATGTGGAAAT AAAAACAACACACCTGTACGACGACCACTCTCCCCAGGCCCCTCTCCTGTCTTCCCTTGC TCCCCAACTCCTCCCCCGAAGGCCCTTTCCCTCCTCGCTCTGTTTGATTTAGAAATCGCT CAGTCCATCATCTGGCGCGGGGCGTTCTGCCAGCCCTCGCACGAGGCAAACGCACAGCCC TCTCTGTTGCTTTATGTTGTCCATGTCCCCCAGCCATCCTGACTTCCTCCCAGCCTCAGC CCTGGTCCTCTCCTGGCACCAGCACCTTAGGAATTGTTGGCAGAAGGCATTTCGACTGCA GGATAGATATGCACATTTCAAGTACCTTTCCCACAAGGTTAAGCCTCCTGTCAGACTCAG AAAGGTATGTAGGTGCTGTGTTTTAGGCAAAGAGGCGGTTTACAGGTCCTTCTAAATGTG TTGAGGAGCTGTTTCCATGTGTTTCAATTTGGGGGTAAAAGGGAGGCATCGTGCTGCCCC GATTTGTGGGGACGAGGAAAGGGCTGCCATCAAATTAAATACTCCTTGGGTCTTAGATCA GGTTAGCCCTAGCCCTGGGGCGAGGCAAAACTCCTCCTAAGAGGATGAGCAAAACTATGG CTCTGCTTTGCCCTGAATTGCTCTCTGGGTCTGAGTCTTCAGGACCTGCTGCTTCAGTCG GCCTTTATTAGCACCAAAGACTCAAAGGTCCCACACACAACACACACCCGTCTCCCTGCC TCTATCCTGCCTTTGGGAGGATCTGGCTTTGTGGCTGAAGGACCGGCCCCTCCAGTGGGA ATGCAGAGCTTCACGTGTGTACTGCTTGTGTGTGTATGTGTGGATTCTGCCTCCACTCTC TCCCCATCTGCTCTGGGTATTTTTGTTTTTGTTTTTGCTTTAGCTTTAGGTTTACAACAG AGAGGAGTTAATCTATCCACAGCCTAAAACTGTTGCCAGTTTTACAATCTCATTGGTGGC TCCCTTTCTCCTTTCCCCTCTGCAGTCTGCCAATCGCTCTTTCATGCCTGTGTATCCAGG CTGCTCTGTGTCCCCACCTGTTCCACGAGTATGAGGCAGAGCACCTGGGCAGCTTTCCTC TCAGTCACTGTTCATCCTACTTGAAAATTAAAACAAGAAAACTCTGCTTAAAAAACTTCA TCTATGGGAACCACAACTCCTGGTTGCCTTTCTCCTGTGTATGTGTAAATTCCTTAATAA ATATTGCAGGGAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 158-436, + strand, RNAz p=0.983795 | |
| 193-301, - strand, RNAz p=0.560909 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 158-436, + strand, RNAz p=0.983795 | |
| 193-301, - strand, RNAz p=0.560909 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 158-476, gnl|bosTau2|chr3 (67988949-67989267) | |
| 158-476, gnl|canFam2|chr15 (5579394-5579062) | |
| 158-476, gnl|danRer3|chr19 (52819172-52819482) | |
| 158-476, gnl|dasNov1|scaffold_11543 (87052-87384) | |
| 158-476, gnl|echTel1|scaffold_276355 (44490-44825) | |
| 158-476, gnl|fr1|chrUn (253394998-253394648) | |
| 158-476, gnl|hg17|chr1 (40551542-40551874) | |
| 158-476, gnl|Hg17|chr1 (40551543-40551861) | |
| 158-476, gnl|loxAfr1|scaffold_19135 (19641-19976) | |
| 158-476, gnl|mm7|chr4 (120412189-120411857) | |
| 158-476, gnl|Mm7|chr4 (120412186-120411868) | |
| 158-476, gnl|monDom2|scaffold_43 (8633866-8633535) | |
| 158-476, gnl|oryCun1|scaffold_202969 (15611-15280) | |
| 158-476, gnl|panTro1|chr1 (41443620-41443952) | |
| 158-476, gnl|rheMac2|chr1 (43296851-43297183) | |
| 158-476, gnl|rn3|chr5 (141554153-141553821) | |
| 158-476, gnl|xenTro1|scaffold_399 (397906-398231) | |
| 888-1024, gnl|bosTau2|chr3 (67993845-67993983) | |
| 888-1024, gnl|canFam2|chr15 (5573316-5572910) | |
| 888-1024, gnl|echTel1|scaffold_134489 (662-256) | |
| 888-1024, gnl|hg17|chr1 (40556976-40557354) | |
| 888-1024, gnl|loxAfr1|scaffold_19135 (24556-24975) | |
| 888-1024, gnl|mm7|chr4 (120409407-120409007) | |
| 888-1024, gnl|monDom2|scaffold_43 (8625864-8625496) | |
| 888-1024, gnl|oryCun1|scaffold_202969 (10447-10090) | |
| 888-1024, gnl|rheMac2|chr1 (43302417-43302797) | |
| 888-1024, gnl|rn3|chr5 (141550854-141550463) | |
| 1032-1165, gnl|bosTau2|chr3 (67994028-67994163) | |
| 1032-1165, gnl|canFam2|chr15 (5573316-5572910) | |
| 1032-1165, gnl|echTel1|scaffold_134489 (662-256) | |
| 1032-1165, gnl|hg17|chr1 (40556976-40557354) | |
| 1032-1165, gnl|Hg17|chr1 (40557284-40557426) | |
| 1032-1165, gnl|loxAfr1|scaffold_19135 (24556-24975) | |
| 1032-1165, gnl|mm7|chr4 (120409407-120409007) | |
| 1032-1165, gnl|Mm7|chr4 (120409089-120408939) | |
| 1032-1165, gnl|monDom2|scaffold_43 (8625864-8625496) | |
| 1032-1165, gnl|oryCun1|scaffold_202969 (10447-10090) | |
| 1032-1165, gnl|rheMac2|chr1 (43302417-43302797) | |
| 1032-1165, gnl|rn3|chr5 (141550854-141550463) | |
| 1541-1838, gnl|bosTau2|chr12 (39747468-39747172) | |
| 1541-1838, gnl|Hg17|chr1 (40557814-40558093) | |
| 1541-1838, gnl|Mm7|chr4 (120408567-120408298) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 158-476, gnl|bosTau2|chr3 (67988949-67989267) | |
| 158-476, gnl|canFam2|chr15 (5579394-5579062) | |
| 158-476, gnl|danRer3|chr19 (52819172-52819482) | |
| 158-476, gnl|dasNov1|scaffold_11543 (87052-87384) | |
| 158-476, gnl|echTel1|scaffold_276355 (44490-44825) | |
| 158-476, gnl|fr1|chrUn (253394998-253394648) | |
| 158-476, gnl|hg17|chr1 (40551542-40551874) | |
| 158-476, gnl|Hg17|chr1 (40551543-40551861) | |
| 158-476, gnl|loxAfr1|scaffold_19135 (19641-19976) | |
| 158-476, gnl|mm7|chr4 (120412189-120411857) | |
| 158-476, gnl|Mm7|chr4 (120412186-120411868) | |
| 158-476, gnl|monDom2|scaffold_43 (8633866-8633535) | |
| 158-476, gnl|oryCun1|scaffold_202969 (15611-15280) | |
| 158-476, gnl|panTro1|chr1 (41443620-41443952) | |
| 158-476, gnl|rheMac2|chr1 (43296851-43297183) | |
| 158-476, gnl|rn3|chr5 (141554153-141553821) | |
| 158-476, gnl|xenTro1|scaffold_399 (397906-398231) | |
| 888-1024, gnl|bosTau2|chr3 (67993845-67993983) | |
| 888-1024, gnl|canFam2|chr15 (5573316-5572910) | |
| 888-1024, gnl|echTel1|scaffold_134489 (662-256) | |
| 888-1024, gnl|hg17|chr1 (40556976-40557354) | |
| 888-1024, gnl|loxAfr1|scaffold_19135 (24556-24975) | |
| 888-1024, gnl|mm7|chr4 (120409407-120409007) | |
| 888-1024, gnl|monDom2|scaffold_43 (8625864-8625496) | |
| 888-1024, gnl|oryCun1|scaffold_202969 (10447-10090) | |
| 888-1024, gnl|rheMac2|chr1 (43302417-43302797) | |
| 888-1024, gnl|rn3|chr5 (141550854-141550463) | |
| 1032-1165, gnl|bosTau2|chr3 (67994028-67994163) | |
| 1032-1165, gnl|canFam2|chr15 (5573316-5572910) | |
| 1032-1165, gnl|echTel1|scaffold_134489 (662-256) | |
| 1032-1165, gnl|hg17|chr1 (40556976-40557354) | |
| 1032-1165, gnl|Hg17|chr1 (40557284-40557426) | |
| 1032-1165, gnl|loxAfr1|scaffold_19135 (24556-24975) | |
| 1032-1165, gnl|mm7|chr4 (120409407-120409007) | |
| 1032-1165, gnl|Mm7|chr4 (120409089-120408939) | |
| 1032-1165, gnl|monDom2|scaffold_43 (8625864-8625496) | |
| 1032-1165, gnl|oryCun1|scaffold_202969 (10447-10090) | |
| 1032-1165, gnl|rheMac2|chr1 (43302417-43302797) | |
| 1032-1165, gnl|rn3|chr5 (141550854-141550463) | |
| 1541-1838, gnl|bosTau2|chr12 (39747468-39747172) | |
| 1541-1838, gnl|Hg17|chr1 (40557814-40558093) | |
| 1541-1838, gnl|Mm7|chr4 (120408567-120408298) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| cbl (1.03318) | |
| fcc (0.593354) | |
| cly (0.361925) | |
| nje (0.33184) | |
| ece (0.229305) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| tra (0.123092) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| nbm (0.0993246) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (1.03318) | |
| fcc (0.593354) | |
| cly (0.361925) | |
| nje (0.33184) | |
| ece (0.229305) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| nmm (0.132802) | |
| tra (0.123092) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| nbm (0.0993246) |