Non-Coding RNA Search

Ss1.1-rcbl0_005349.5

Sequence:


               
               GCGGAGCGCGAGGCGCGCGAGAAAGGGCACTTGGAACCCACCGAGCTGCTGATGAACCGG
GCTTACTTGCAGAGCATCACTCCTCAGGGGTACTCTGACTCAGAGGAGCGGGAGAGTATG
CCGAGGGATGGCGAGAGCGAGAAGGAGCACGAGAAGGAAGGCGAGGATGGCTACGGGAAG
CTGGGCAGACAGGATGGCGACGAGGAGTTCGAGGAGGAAGAGGAAGAAAGTGAAAATAAA
AGTATGGATACGGATCCCGAAACGATACGAGATGAAGAGGAGACTGGAGACCACTCCATG
GACGATAGTTCAGAGGATGGGAAAATGGAAACCAAATCAGACCACGAGGAAGACAATATG
GAAGATGGCATGTAATAAACTACTGCATTTTAGGCTTCCTATTTTTTTTTTCCAGTAGTA
TTGTTACCTGCTTGAAAACACTGCTGTGTTAAGCTGTTCATGCACGTGCCTGACGCTTCC
AGGAAGCTGTAGAGAGGGACAGACGGGGCAGTTCAGCCAAGACAGATTTAGACGGAGTTG
GAGCTGGGTATTGTTAAAAACTGCATTATGCAAAAATTTTGTACAGTGTTAAGGCCTAAA
AACTGTGTGGTTCAGAGACTAATTCCTGTGTTTAATAGCAGTTATACTTTAAGCACAACT
AGAAAATTGTAAGAATTGCACTCTACTTATGTATCACTACAAACTTTAAAAAACTATGTC
TAATTTATATTAATACATTTTTAAAAGGTGCCCGCACTACCATACATCAGTATTTTTATT
ATTATTATTGTTATTCCTTCTTAATTTAATGTGCTCGCACTACAATGCATCAGTATTGAT
TCTTCTCTACCTTCCTTTTGCTAGTCATAAATTTCCCATTTTTTTTCTCAGCCTAAGTAA
CCACACAATTTTAGGCCTCAAATTTTTTTTTTTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGAGCGCGAGGCGCGCGAGAAAGGGCACTTGGAACCCACCGAGCTGCTGATGAACCGG
GCTTACTTGCAGAGCATCACTCCTCAGGGGTACTCTGACTCAGAGGAGCGGGAGAGTATG
CCGAGGGATGGCGAGAGCGAGAAGGAGCACGAGAAGGAAGGCGAGGATGGCTACGGGAAG
CTGGGCAGACAGGATGGCGACGAGGAGTTCGAGGAGGAAGAGGAAGAAAGTGAAAATAAA
AGTATGGATACGGATCCCGAAACGATACGAGATGAAGAGGAGACTGGAGACCACTCCATG
GACGATAGTTCAGAGGATGGGAAAATGGAAACCAAATCAGACCACGAGGAAGACAATATG
GAAGATGGCATGTAATAAACTACTGCATTTTAGGCTTCCTATTTTTTTTTTCCAGTAGTA
TTGTTACCTGCTTGAAAACACTGCTGTGTTAAGCTGTTCATGCACGTGCCTGACGCTTCC
AGGAAGCTGTAGAGAGGGACAGACGGGGCAGTTCAGCCAAGACAGATTTAGACGGAGTTG
GAGCTGGGTATTGTTAAAAACTGCATTATGCAAAAATTTTGTACAGTGTTAAGGCCTAAA
AACTGTGTGGTTCAGAGACTAATTCCTGTGTTTAATAGCAGTTATACTTTAAGCACAACT
AGAAAATTGTAAGAATTGCACTCTACTTATGTATCACTACAAACTTTAAAAAACTATGTC
TAATTTATATTAATACATTTTTAAAAGGTGCCCGCACTACCATACATCAGTATTTTTATT
ATTATTATTGTTATTCCTTCTTAATTTAATGTGCTCGCACTACAATGCATCAGTATTGAT
TCTTCTCTACCTTCCTTTTGCTAGTCATAAATTTCCCATTTTTTTTCTCAGCCTAAGTAA
CCACACAATTTTAGGCCTCAAATTTTTTTTTTTTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3970868|dbj|BAA34798.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3970868|dbj|BAA34798.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               81-200, + strand, RNAz p=0.602237
               

               
               361-480, - strand, RNAz p=0.820613

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-200, + strand, RNAz p=0.602237
               

               
               361-480, - strand, RNAz p=0.820613

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014795, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014795, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-931, gnl|bosTau2|chr2 (35501702-35500765)
               

               
               1-931, gnl|Hg17|chr2 (144981124-144980190)
               

               
               1-931, gnl|Mm7|chr2 (44996261-44995315)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-931, gnl|bosTau2|chr2 (35501702-35500765)
               

               
               1-931, gnl|Hg17|chr2 (144981124-144980190)
               

               
               1-931, gnl|Mm7|chr2 (44996261-44995315)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cbl (0.45919)
               

               
               nlu (0.191681)
               

               
               spl (0.143184)
               

               
               ute (0.132784)
               

               
               bla (0.124347)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.45919)
               

               
               nlu (0.191681)
               

               
               spl (0.143184)
               

               
               ute (0.132784)
               

               
               bla (0.124347)

	81-200, + strand, RNAz p=0.602237
	361-480, - strand, RNAz p=0.820613

	1-931, gnl\|bosTau2\|chr2 (35501702-35500765)
	1-931, gnl\|Hg17\|chr2 (144981124-144980190)
	1-931, gnl\|Mm7\|chr2 (44996261-44995315)

	cbl (0.45919)
	nlu (0.191681)
	spl (0.143184)
	ute (0.132784)
	bla (0.124347)