Non-Coding RNA Search

Ss1.1-rcbl0_005391.5

Sequence:


               
               ATATTCAAGATATTCTGATCAATTTAAAAAACTCATATTATGCCTACTTAATGTATATCT
CTATATTTTTACTGTATGAAAATATTAAAGTTATGAGCTAAAATTGATTTTCACTCACAT
TTACTGAAGCACTGACTAATCTAAATTATAAATCTTTATAGCAATCAGTGGAATACATCT
TAAAATCAATAACCCTGTAAATCATTCCATTAACCAATTTGTTAAAATTATAATTTATTT
TATAAGTTAGAAAATTCCAAATAAACTTCAGTGTATACAAATTCCTTCCTAGGCTGAAAG
AAATGAAAAGATAAAAATGCCCAGATATGGGAAAATGTACAGAGATTTATCTTCTTTCTC
CTTTATATTCCATTGTACTATTTTGTGTTGAATAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATTCAAGATATTCTGATCAATTTAAAAAACTCATATTATGCCTACTTAATGTATATCT
CTATATTTTTACTGTATGAAAATATTAAAGTTATGAGCTAAAATTGATTTTCACTCACAT
TTACTGAAGCACTGACTAATCTAAATTATAAATCTTTATAGCAATCAGTGGAATACATCT
TAAAATCAATAACCCTGTAAATCATTCCATTAACCAATTTGTTAAAATTATAATTTATTT
TATAAGTTAGAAAATTCCAAATAAACTTCAGTGTATACAAATTCCTTCCTAGGCTGAAAG
AAATGAAAAGATAAAAATGCCCAGATATGGGAAAATGTACAGAGATTTATCTTCTTTCTC
CTTTATATTCCATTGTACTATTTTGTGTTGAATAGC

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-160, gnl|bosTau2|chr2 (4485519-4485673)
               

               
               1-160, gnl|canFam2|chr36 (32372287-32372382)
               

               
               1-160, gnl|dasNov1|scaffold_161813 (7076-6985)
               

               
               1-160, gnl|echTel1|scaffold_321602 (43574-43675)
               

               
               1-160, gnl|galGal2|chr7 (1110183-1110075)
               

               
               1-160, gnl|hg17|chr2 (188033468-188033568)
               

               
               1-160, gnl|Hg17|chr2 (188033627-188033476)
               

               
               1-160, gnl|loxAfr1|scaffold_53361 (17252-17332)
               

               
               1-160, gnl|mm7|chr2 (84174372-84174469)
               

               
               1-160, gnl|Mm7|chr2 (84174520-84174380)
               

               
               1-160, gnl|monDom2|scaffold_2 (92024334-92024406)
               

               
               1-160, gnl|oryCun1|scaffold_127885 (5614-5525)
               

               
               1-160, gnl|panTro1|chr13 (77860562-77860662)
               

               
               1-160, gnl|rheMac2|chr12 (50978708-50978807)
               

               
               1-160, gnl|rn3|chr3 (67446924-67447021)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-160, gnl|bosTau2|chr2 (4485519-4485673)
               

               
               1-160, gnl|canFam2|chr36 (32372287-32372382)
               

               
               1-160, gnl|dasNov1|scaffold_161813 (7076-6985)
               

               
               1-160, gnl|echTel1|scaffold_321602 (43574-43675)
               

               
               1-160, gnl|galGal2|chr7 (1110183-1110075)
               

               
               1-160, gnl|hg17|chr2 (188033468-188033568)
               

               
               1-160, gnl|Hg17|chr2 (188033627-188033476)
               

               
               1-160, gnl|loxAfr1|scaffold_53361 (17252-17332)
               

               
               1-160, gnl|mm7|chr2 (84174372-84174469)
               

               
               1-160, gnl|Mm7|chr2 (84174520-84174380)
               

               
               1-160, gnl|monDom2|scaffold_2 (92024334-92024406)
               

               
               1-160, gnl|oryCun1|scaffold_127885 (5614-5525)
               

               
               1-160, gnl|panTro1|chr13 (77860562-77860662)
               

               
               1-160, gnl|rheMac2|chr12 (50978708-50978807)
               

               
               1-160, gnl|rn3|chr3 (67446924-67447021)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cbl (0.229595)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)

	1-160, gnl\|bosTau2\|chr2 (4485519-4485673)
	1-160, gnl\|canFam2\|chr36 (32372287-32372382)
	1-160, gnl\|dasNov1\|scaffold_161813 (7076-6985)
	1-160, gnl\|echTel1\|scaffold_321602 (43574-43675)
	1-160, gnl\|galGal2\|chr7 (1110183-1110075)
	1-160, gnl\|hg17\|chr2 (188033468-188033568)
	1-160, gnl\|Hg17\|chr2 (188033627-188033476)
	1-160, gnl\|loxAfr1\|scaffold_53361 (17252-17332)
	1-160, gnl\|mm7\|chr2 (84174372-84174469)
	1-160, gnl\|Mm7\|chr2 (84174520-84174380)
	1-160, gnl\|monDom2\|scaffold_2 (92024334-92024406)
	1-160, gnl\|oryCun1\|scaffold_127885 (5614-5525)
	1-160, gnl\|panTro1\|chr13 (77860562-77860662)
	1-160, gnl\|rheMac2\|chr12 (50978708-50978807)
	1-160, gnl\|rn3\|chr3 (67446924-67447021)