Non-Coding RNA Search

Ss1.1-rcbl0_006005.5

Sequence:


               
               GGAATCGGCCGAGGGGCGTGACTATTCTTGCCTGGTAACAACTGAGAAACAACCATGGGT
AAGGGTGATAAAATTCACATCAACATCGTGGTCATTGGCCATGTGGACTCCGGGAAGTCT
ACATCCACTGGTCACCTGATCTACAAATGCGGTGGTATTGATAAAAGAACCATCGAAAAA
TTCGAGAAGGAAGCTCAGGAGATGGGAAAGGGTTCCTTCAAGTATGCCTGGGTATTGGAC
AAACTGAAGGCTGAACGTGAACGTGGAATCACCATTGATATTGCTTTGTGGAAGTTTGAG
TCCATTAAGTTTGAGGTGACCATCATCGATGCTCCTGGACACAGAGATTTCATCAAAAAC
ATGATCACAGGAACCTCACAGGCTGATTGTGCTGTATTGATTATTGCTGCTGGTGTTGGA
GAGTTTGAAGCTGGTATTTCCAAGAATGGACAAACTCGTGAACATGCCCTGCTTGCTTAT
ACACTGGGTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATCGGCCGAGGGGCGTGACTATTCTTGCCTGGTAACAACTGAGAAACAACCATGGGT
AAGGGTGATAAAATTCACATCAACATCGTGGTCATTGGCCATGTGGACTCCGGGAAGTCT
ACATCCACTGGTCACCTGATCTACAAATGCGGTGGTATTGATAAAAGAACCATCGAAAAA
TTCGAGAAGGAAGCTCAGGAGATGGGAAAGGGTTCCTTCAAGTATGCCTGGGTATTGGAC
AAACTGAAGGCTGAACGTGAACGTGGAATCACCATTGATATTGCTTTGTGGAAGTTTGAG
TCCATTAAGTTTGAGGTGACCATCATCGATGCTCCTGGACACAGAGATTTCATCAAAAAC
ATGATCACAGGAACCTCACAGGCTGATTGTGCTGTATTGATTATTGCTGCTGGTGTTGGA
GAGTTTGAAGCTGGTATTTCCAAGAATGGACAAACTCGTGAACATGCCCTGCTTGCTTAT
ACACTGGGTGTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47209132|emb|CAF89665.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47209132|emb|CAF89665.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               47-491, gnl|bosTau2|chr11 (67285720-67285280)
               

               
               47-491, gnl|Hg17|chr9 (132924420-132924860)
               

               
               47-491, gnl|Mm7|chr2 (40563055-40563471)
               


               
               67-489, gnl|bosTau2|chr10 (14624124-14623708)
               

               
               67-489, gnl|Hg17|chr7 (22324849-22324427)
               

               
               67-489, gnl|Mm7|chr2 (40563072-40563469)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-491, gnl|bosTau2|chr11 (67285720-67285280)
               

               
               47-491, gnl|Hg17|chr9 (132924420-132924860)
               

               
               47-491, gnl|Mm7|chr2 (40563055-40563471)
               


               
               67-489, gnl|bosTau2|chr10 (14624124-14623708)
               

               
               67-489, gnl|Hg17|chr7 (22324849-22324427)
               

               
               67-489, gnl|Mm7|chr2 (40563072-40563469)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.344392)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)

	47-491, gnl\|bosTau2\|chr11 (67285720-67285280)
	47-491, gnl\|Hg17\|chr9 (132924420-132924860)
	47-491, gnl\|Mm7\|chr2 (40563055-40563471)

	67-489, gnl\|bosTau2\|chr10 (14624124-14623708)
	67-489, gnl\|Hg17\|chr7 (22324849-22324427)
	67-489, gnl\|Mm7\|chr2 (40563072-40563469)