Non-Coding RNA Search

Ss1.1-rcbl0_006236.5

Sequence:


               
               ATCATTCATGTGAAAAGTAAGGTTTTCACAGGAACAATAGCAGTTGTGTCTATCACTTAC
TGAATAGAAAGCAGGTTAAAAATGCTTTCCACTTGATCCCAGAGATAACCCCATAGAGAG
ATAATAGGCATGCAAATAAGGAAGCAGAAATTCAGAGAAGTCCCTTGGTCAGGTGCAGGG
CTGATATCAGAGTCAGTTATTCCCAGCACTAACTTATCCTCTAAGTTTCTCTAGATATCA
TACACTTTAGCTGGTTCTATGTAGTTATCATCACAGTACTACCCCCTGCCCCACCCTTAA
GAATATTTAAGACATATGATTGTAGATATTGAATGAATAAGGATATTGTAAACAGGAAAA
AAATTTCTATTTGGTAAAGAGGAAAACAAACATACATTAAGGGTGGACTTTTTCTCCTGG
CCTCTACATGCAAGTTTTCAGATATAAGCACATTAATAACTGCATGGTTAGCAACACATA
CGTTTTCAACAAGGGCTTGCATAGCAATTGTAAATCAGTATTGACTGATATTGCTTATTT
TTCATTATAGACTAGAATTATCATGTTAAATATTGGTTTACATGAATGTAGCATTTGCTG
TTAATCCTGTTTTGACAAGTCTGGGGGGAAATAAATATCACATTTTTTTGAGGACTTCTA
CAATGTGAACAATGTTTCAAGAACTACCACAGTTTGGAAACGTAGACAAAGTGTCATTTG
CTTCTCTATGGTTTTAAGTGTTAAGTATACTGTAATGCTTCTTTCTTACAGTAAACATCA
AACCCCAAATGGTACTGGGAAGAAGTGCAGCATGTTTCATTGTAGTCTGTGATAAGAAGA
ATTAGAGTCAAGACTTAGATATATTCTGGAAAAAAAGTTAAGCACTTTTTAACCAAAGTT
CAGGAAGGAAGAGTGTTGTCATGTTTTGTGCGTTCACATGTTGTAAGAAAACTGTTTAGT
GGAAATGTGGGTAAATTTCTCACAGCACAGCTTTTCAGACTGAATGTGACTTCAGTGGGG
CTCTAGAAGATTTCATTCTCTAATCTTCTGGCACAATGACCACAATGACTCACTTTGATG
TAATTTACTTGGAACAGAAAAAGCAAAGAGTTGATTTTTTTTTTTAACCCTAAAGTTGTC
AAATATGTAATACTGGTGAATTTCATTATTGACAATTTGTCATGAACATGCATTTTTCTC
ATACAGCATTGATTAATAAGCCAAATTTGAATCCTGGGTATATTGGGAATTATTCTGTCA
TGATATTAAAGGAATGCCACTGTCTCAGACAGGTTGGAACTATATATTTTGAAATGAACT
TTTATTTACCACTTTCTACTTTGCAATACTTTTATCTTAGTTGCATGATACAAACAGTAT
TAAAAAATCCTAGTTTGAACTAAAAATCAAACTTGGACACAATTTGTGTATACTAATCAT
AAAGGATAAATATTTATGGATATGTACAATCTAAGTACAGTAAATAGTACATAACAACCA
TACCAAATCCTTCAGATCACAGAATTATTGGTGATTTATATCCATTTCCTTACAGAACTC
TGGGCCATACAATAAAAATTTGATGCCTTTCAGAAATAAAGAATGCTATTCTTCAGTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCATTCATGTGAAAAGTAAGGTTTTCACAGGAACAATAGCAGTTGTGTCTATCACTTAC
TGAATAGAAAGCAGGTTAAAAATGCTTTCCACTTGATCCCAGAGATAACCCCATAGAGAG
ATAATAGGCATGCAAATAAGGAAGCAGAAATTCAGAGAAGTCCCTTGGTCAGGTGCAGGG
CTGATATCAGAGTCAGTTATTCCCAGCACTAACTTATCCTCTAAGTTTCTCTAGATATCA
TACACTTTAGCTGGTTCTATGTAGTTATCATCACAGTACTACCCCCTGCCCCACCCTTAA
GAATATTTAAGACATATGATTGTAGATATTGAATGAATAAGGATATTGTAAACAGGAAAA
AAATTTCTATTTGGTAAAGAGGAAAACAAACATACATTAAGGGTGGACTTTTTCTCCTGG
CCTCTACATGCAAGTTTTCAGATATAAGCACATTAATAACTGCATGGTTAGCAACACATA
CGTTTTCAACAAGGGCTTGCATAGCAATTGTAAATCAGTATTGACTGATATTGCTTATTT
TTCATTATAGACTAGAATTATCATGTTAAATATTGGTTTACATGAATGTAGCATTTGCTG
TTAATCCTGTTTTGACAAGTCTGGGGGGAAATAAATATCACATTTTTTTGAGGACTTCTA
CAATGTGAACAATGTTTCAAGAACTACCACAGTTTGGAAACGTAGACAAAGTGTCATTTG
CTTCTCTATGGTTTTAAGTGTTAAGTATACTGTAATGCTTCTTTCTTACAGTAAACATCA
AACCCCAAATGGTACTGGGAAGAAGTGCAGCATGTTTCATTGTAGTCTGTGATAAGAAGA
ATTAGAGTCAAGACTTAGATATATTCTGGAAAAAAAGTTAAGCACTTTTTAACCAAAGTT
CAGGAAGGAAGAGTGTTGTCATGTTTTGTGCGTTCACATGTTGTAAGAAAACTGTTTAGT
GGAAATGTGGGTAAATTTCTCACAGCACAGCTTTTCAGACTGAATGTGACTTCAGTGGGG
CTCTAGAAGATTTCATTCTCTAATCTTCTGGCACAATGACCACAATGACTCACTTTGATG
TAATTTACTTGGAACAGAAAAAGCAAAGAGTTGATTTTTTTTTTTAACCCTAAAGTTGTC
AAATATGTAATACTGGTGAATTTCATTATTGACAATTTGTCATGAACATGCATTTTTCTC
ATACAGCATTGATTAATAAGCCAAATTTGAATCCTGGGTATATTGGGAATTATTCTGTCA
TGATATTAAAGGAATGCCACTGTCTCAGACAGGTTGGAACTATATATTTTGAAATGAACT
TTTATTTACCACTTTCTACTTTGCAATACTTTTATCTTAGTTGCATGATACAAACAGTAT
TAAAAAATCCTAGTTTGAACTAAAAATCAAACTTGGACACAATTTGTGTATACTAATCAT
AAAGGATAAATATTTATGGATATGTACAATCTAAGTACAGTAAATAGTACATAACAACCA
TACCAAATCCTTCAGATCACAGAATTATTGGTGATTTATATCCATTTCCTTACAGAACTC
TGGGCCATACAATAAAAATTTGATGCCTTTCAGAAATAAAGAATGCTATTCTTCAGTGTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1401-1517, - strand, RNAz p=0.957593

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1401-1517, - strand, RNAz p=0.957593

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1618, gnl|bosTau2|chr2 (26506212-26507819)
               

               
               1-1618, gnl|Hg17|chr2 (158096371-158094808)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1618, gnl|bosTau2|chr2 (26506212-26507819)
               

               
               1-1618, gnl|Hg17|chr2 (158096371-158094808)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               cbl (1.49237)
               

               
               liv (0.877706)
               

               
               clu (0.358938)
               

               
               mga (0.32041)
               

               
               thg (0.253582)
               

               
               nlu (0.191681)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (1.49237)
               

               
               liv (0.877706)
               

               
               clu (0.358938)
               

               
               mga (0.32041)
               

               
               thg (0.253582)
               

               
               nlu (0.191681)
               

               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)

	1-1618, gnl\|bosTau2\|chr2 (26506212-26507819)
	1-1618, gnl\|Hg17\|chr2 (158096371-158094808)

	cbl (1.49237)
	liv (0.877706)
	clu (0.358938)
	mga (0.32041)
	thg (0.253582)
	nlu (0.191681)
	spl (0.143184)
	pla (0.133672)
	nmm (0.132802)