Ss1.1-rcbl0_006261.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
CGGGCGCTCCGGGGGCTGACGGAGAGGGCCGCCGCCCAGCAGTAGACGCTGTCTCAGCCG GCCGAGCCGCAGTCTCCGCGGTGTGTTAAGTGAGCCCCGGCCCGGTCCCCACTCCCGCCG CCGCCATGGGCTGCACGTTGAGCGCCGAAGACAAGGCGGCGGTGGAACGGAGCAAGATGA TCGACCGCAACTTGCGGGAGGATGGGGAGAAAGCGGCGAAAGAAGTGAAGCTGCTGCTAC TTGGTGCTGGAGAATCTGGTAAAAGCACCATCGTGAAACAGATGAAAATCATTCATGAGG ATGGCTATTCAGAGGAAGAATGTAAACAATATAAAGTGGTTGTCTACAGCAATACTATAC AGTCCATCATTGCAATCATTAGAGCCATGGGACGGCTAAAGATCGACTTTGGGGAAGCTG CCAGAGCAGACGATGCTCGGCAGTTATTTGTTTTGGCTGGCAGTGCTGAAGAAGGGGTTA TGACTCCAGAATTAGCAGGAGTAATTAAACGGTTATGGCGAGATGGTGGGGTGCAAGCTT GCTTCAGCAGATCCAGGGAATATCAGCTCAATGATTCTGCTTCATATTACCTAAATGATT TGGATAGAATATCCCAAACCAACTACATTCCAACTCAGCAAGATGTCCTGCGGACAAGAG TGAAGACCACAGGCATTGTGGAGACACACTTCACTTTCAAAGACCTGTACTTCAAGATGT TTGATGTAGGTGGCCAAAGATCAGAACGAAAGAAGTGGATTCACTGTTTTGAGGGAGTTA CAGCAATTATCTTCTGTGTGGCCCTCAGTGATTATGACCTTGTACTGGCTGAGGATGAGG AGATGAACCGAATGCATGAAAGCATGAAACTGTTCGACAGCATTTGTAACAATAAATGGT TTACAGACACTTCCATCATTCTGTTCCTCAACAAGAAAGATCTTTTTGAGGAGAAAATAA AGAGGAGTCCATTAACTATCTGTTATCCAGAATACACAGGTTCCAATACATATGAAGAAG CAGCTGCTTACATTCAGTGCCAGTTTGAAGATCTGAACAGAAGAAAAGATACCAAGGAGA TCTATACCCACTTCACTTGTGCCACAGACACCAAGAACGTGCAGTTTGTTTTTGATGCTG TTACAGATGTCATCATTAAAAACAACTTAAAAGAATGTGGACTCTATTGAAGAGGGTGGA TGTTAATAAAAGTTATTACGGTGTGGAGTTTCGAGACCAGACTTCTTTTGCTGTCTCATT GGGCAGTTGCAAGCATGAACGGGACCAGGGAATGGCAGCGGCATGCAGAATCTTAGCACT CTTTAGCACAATCTTTTGTATTAAGGAACTCTTAATTGACACAGATGCTAAAGTCAGATA TTGGAATTGAAATAACTGTAAAGTATGATTTGATCATCAAGACATCACTTGGAGTTCACA GTCTCAAATGTTTAGGGCAGATGTGAAGTTGAGGTGCTGCATTCTAGAACTTCAATATGT AGCGTACTCTTTTTTCTTCTTGACAAACCATCAGTAGTTCAGTGTTTTAGGTGTTTTTGT TTTGTTTTTGTTTTTCCATCAAAGGAAGAATAACTTCACTAAATTTTAGTTCTTTGCAAA AGAATCTTTATTAAAACACAAACAATCTTAACTATGCACATGATGTGACAAGATCATCTT GAAAATACTCTTCTTAGTAGGAACTCTTTGTTTTTAACTCTCAGTATGATCAGAATATAA TATTTGCATAATTCTTTAATTCTTTGTAGTTATTGGGACTGTAATTATAGCTTTTTGGAT GCAATTTATGTTACTGTCCTGTTCAGAGTACCATTATGGTTTCTAAACGGTAATTAACAT TGAAGAGCTCTGTAATAAGATTCTAGCTCTCTCTTTTTTTTTAAGCTTATGGTTGAAGGT TAACATGGTTTATGCTGATTACCAAATTACGAGATAAATGCTGATATGGTATGATAAAGT CAGCTTCTTGGATACAGACATACCAAGGGCAGCTGCCAATTAGAAATGCAAATTGCTAAA TTCCAAACAGAACCAGTGACTTTGCTGCTACATATCTGCTAAATTGGCCACTTTGATTCT TGCTTGTTTGTCTCAGTCATAGGGAGTTCTGTAAAAGATGCCCCCTGTTTTCCATCTACC ATGGCCTTTTTCTGTTGAGAAACATCTAAAGTGTATTAATAGTGCATGCTTTTACTTTGC AAATGTGGTGCCAAATCCCTGTTTGCCACTGTTTTTGTTGTAGCAATGTTAATTGTAGTA ATCCTTAGTCAGTACCTTCCTTTGCTGAAACCATTGATTTTAGGACTTTTCCCCACTGTG TTGTGTGTACAGATTTTAATCTGTTATAGTTGGCAGCAGTATTAAAATGGTGAGTAAAGA GTCAAAAAAAAAAAAAAAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
CGGGCGCTCCGGGGGCTGACGGAGAGGGCCGCCGCCCAGCAGTAGACGCTGTCTCAGCCG GCCGAGCCGCAGTCTCCGCGGTGTGTTAAGTGAGCCCCGGCCCGGTCCCCACTCCCGCCG CCGCCATGGGCTGCACGTTGAGCGCCGAAGACAAGGCGGCGGTGGAACGGAGCAAGATGA TCGACCGCAACTTGCGGGAGGATGGGGAGAAAGCGGCGAAAGAAGTGAAGCTGCTGCTAC TTGGTGCTGGAGAATCTGGTAAAAGCACCATCGTGAAACAGATGAAAATCATTCATGAGG ATGGCTATTCAGAGGAAGAATGTAAACAATATAAAGTGGTTGTCTACAGCAATACTATAC AGTCCATCATTGCAATCATTAGAGCCATGGGACGGCTAAAGATCGACTTTGGGGAAGCTG CCAGAGCAGACGATGCTCGGCAGTTATTTGTTTTGGCTGGCAGTGCTGAAGAAGGGGTTA TGACTCCAGAATTAGCAGGAGTAATTAAACGGTTATGGCGAGATGGTGGGGTGCAAGCTT GCTTCAGCAGATCCAGGGAATATCAGCTCAATGATTCTGCTTCATATTACCTAAATGATT TGGATAGAATATCCCAAACCAACTACATTCCAACTCAGCAAGATGTCCTGCGGACAAGAG TGAAGACCACAGGCATTGTGGAGACACACTTCACTTTCAAAGACCTGTACTTCAAGATGT TTGATGTAGGTGGCCAAAGATCAGAACGAAAGAAGTGGATTCACTGTTTTGAGGGAGTTA CAGCAATTATCTTCTGTGTGGCCCTCAGTGATTATGACCTTGTACTGGCTGAGGATGAGG AGATGAACCGAATGCATGAAAGCATGAAACTGTTCGACAGCATTTGTAACAATAAATGGT TTACAGACACTTCCATCATTCTGTTCCTCAACAAGAAAGATCTTTTTGAGGAGAAAATAA AGAGGAGTCCATTAACTATCTGTTATCCAGAATACACAGGTTCCAATACATATGAAGAAG CAGCTGCTTACATTCAGTGCCAGTTTGAAGATCTGAACAGAAGAAAAGATACCAAGGAGA TCTATACCCACTTCACTTGTGCCACAGACACCAAGAACGTGCAGTTTGTTTTTGATGCTG TTACAGATGTCATCATTAAAAACAACTTAAAAGAATGTGGACTCTATTGAAGAGGGTGGA TGTTAATAAAAGTTATTACGGTGTGGAGTTTCGAGACCAGACTTCTTTTGCTGTCTCATT GGGCAGTTGCAAGCATGAACGGGACCAGGGAATGGCAGCGGCATGCAGAATCTTAGCACT CTTTAGCACAATCTTTTGTATTAAGGAACTCTTAATTGACACAGATGCTAAAGTCAGATA TTGGAATTGAAATAACTGTAAAGTATGATTTGATCATCAAGACATCACTTGGAGTTCACA GTCTCAAATGTTTAGGGCAGATGTGAAGTTGAGGTGCTGCATTCTAGAACTTCAATATGT AGCGTACTCTTTTTTCTTCTTGACAAACCATCAGTAGTTCAGTGTTTTAGGTGTTTTTGT TTTGTTTTTGTTTTTCCATCAAAGGAAGAATAACTTCACTAAATTTTAGTTCTTTGCAAA AGAATCTTTATTAAAACACAAACAATCTTAACTATGCACATGATGTGACAAGATCATCTT GAAAATACTCTTCTTAGTAGGAACTCTTTGTTTTTAACTCTCAGTATGATCAGAATATAA TATTTGCATAATTCTTTAATTCTTTGTAGTTATTGGGACTGTAATTATAGCTTTTTGGAT GCAATTTATGTTACTGTCCTGTTCAGAGTACCATTATGGTTTCTAAACGGTAATTAACAT TGAAGAGCTCTGTAATAAGATTCTAGCTCTCTCTTTTTTTTTAAGCTTATGGTTGAAGGT TAACATGGTTTATGCTGATTACCAAATTACGAGATAAATGCTGATATGGTATGATAAAGT CAGCTTCTTGGATACAGACATACCAAGGGCAGCTGCCAATTAGAAATGCAAATTGCTAAA TTCCAAACAGAACCAGTGACTTTGCTGCTACATATCTGCTAAATTGGCCACTTTGATTCT TGCTTGTTTGTCTCAGTCATAGGGAGTTCTGTAAAAGATGCCCCCTGTTTTCCATCTACC ATGGCCTTTTTCTGTTGAGAAACATCTAAAGTGTATTAATAGTGCATGCTTTTACTTTGC AAATGTGGTGCCAAATCCCTGTTTGCCACTGTTTTTGTTGTAGCAATGTTAATTGTAGTA ATCCTTAGTCAGTACCTTCCTTTGCTGAAACCATTGATTTTAGGACTTTTCCCCACTGTG TTGTGTGTACAGATTTTAATCTGTTATAGTTGGCAGCAGTATTAAAATGGTGAGTAAAGA GTCAAAAAAAAAAAAAAAAAAAAA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
287-405, + strand, RNAz p=0.617492 | |
882-1001, - strand, RNAz p=0.951283 |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
287-405, + strand, RNAz p=0.617492 | |
882-1001, - strand, RNAz p=0.951283 |
Aligned organism(s): 66 entry(ies) | More info |
Aligned organism(s): 66 entry(ies) | Help | Less info |
2-246, gnl|bosTau2|chr3 (25912771-25912527) | |
2-246, gnl|Hg17|chr1 (109803263-109803505) | |
2-246, gnl|Mm7|chr3 (107964416-107964173) | |
119-244, gnl|bosTau2|chr22 (38479168-38479292) | |
119-244, gnl|Hg17|chr3 (50248765-50248889) | |
119-244, gnl|Mm7|chr9 (107364672-107364548) | |
287-429, gnl|bosTau2|chr3 (25885108-25884966) | |
287-429, gnl|canFam2|chr6 (45353094-45352934) | |
287-429, gnl|danRer3|chr8 (21760792-21760631) | |
287-429, gnl|dasNov1|scaffold_274382 (454-617) | |
287-429, gnl|echTel1|scaffold_323861 (47163-47000) | |
287-429, gnl|fr1|chrUn (235522778-235522941) | |
287-429, gnl|galGal2|chrUn (10809562-10809405) | |
287-429, gnl|hg17|chr1 (109828545-109828708) | |
287-429, gnl|Hg17|chr1 (109828560-109828702) | |
287-429, gnl|loxAfr1|scaffold_20391 (12720-12577) | |
287-429, gnl|mm7|chr3 (107941988-107941825) | |
287-429, gnl|Mm7|chr3 (107941971-107941829) | |
287-429, gnl|monDom2|scaffold_0 (7032187-7032038) | |
287-429, gnl|oryCun1|scaffold_208853 (123301-123464) | |
287-429, gnl|panTro1|chr1 (108759131-108759294) | |
287-429, gnl|rheMac2|chr1 (112634402-112634565) | |
287-429, gnl|rn3|chr2 (203646720-203646557) | |
287-429, gnl|tetNig1|chr9 (2912464-2912301) | |
287-429, gnl|xenTro1|scaffold_19 (2074825-2074986) | |
588-716, gnl|bosTau2|chr22 (38496401-38496529) | |
588-716, gnl|canFam2|chr20 (42077545-42077403) | |
588-716, gnl|danRer3|chr4 (28245914-28245773) | |
588-716, gnl|dasNov1|scaffold_90962 (7826-7969) | |
588-716, gnl|echTel1|scaffold_264021 (6066-5927) | |
588-716, gnl|fr1|chrUn (102497341-102497486) | |
588-716, gnl|galGal2|chr12 (2814681-2814539) | |
588-716, gnl|hg17|chr3 (50268622-50268764) | |
588-716, gnl|Hg17|chr3 (50268629-50268757) | |
588-716, gnl|loxAfr1|scaffold_49072 (9892-9750) | |
588-716, gnl|mm7|chr9 (107346519-107346341) | |
588-716, gnl|Mm7|chr9 (107346510-107346382) | |
588-716, gnl|monDom2|scaffold_601 (9773-9631) | |
588-716, gnl|oryCun1|scaffold_174716 (41811-41950) | |
588-716, gnl|panTro1|chr2 (51848533-51848675) | |
588-716, gnl|rheMac2|chr2 (86162315-86162173) | |
588-716, gnl|rn3|chr8 (112884283-112884141) | |
588-716, gnl|tetNig1|chr11 (4752296-4752159) | |
588-716, gnl|xenTro1|scaffold_189 (676927-677062) | |
845-1001, gnl|bosTau2|chr18 (25313199-25313355) | |
845-1001, gnl|canFam2|chr2 (62701035-62700877) | |
845-1001, gnl|danRer3|chr18 (29230808-29230650) | |
845-1001, gnl|dasNov1|scaffold_35957 (9199-9357) | |
845-1001, gnl|echTel1|scaffold_180933 (5536-5372) | |
845-1001, gnl|fr1|chrUn (313773306-313773148) | |
845-1001, gnl|galGal2|chr11 (2204161-2204319) | |
845-1001, gnl|hg17|chr16 (54932242-54932400) | |
845-1001, gnl|Hg17|chr16 (54932246-54932402) | |
845-1001, gnl|loxAfr1|scaffold_49072 (9041-8877) | |
845-1001, gnl|mm7|chr8 (92543014-92543172) | |
845-1001, gnl|Mm7|chr8 (92543018-92543174) | |
845-1001, gnl|monDom2|scaffold_35 (22959389-22959547) | |
845-1001, gnl|oryCun1|scaffold_198557 (188846-188703) | |
845-1001, gnl|panTro1|chr18 (49026749-49026907) | |
845-1001, gnl|rheMac2|chr20 (54657213-54657371) | |
845-1001, gnl|rn3|chr19 (11490218-11490060) | |
845-1001, gnl|tetNig1|chr13 (4564525-4564367) | |
845-1001, gnl|xenTro1|scaffold_180 (298782-298624) | |
1211-2403, gnl|bosTau2|chr3 (25869504-25868319) | |
1211-2403, gnl|Hg17|chr1 (109847007-109848176) | |
1211-2403, gnl|Mm7|chr3 (107927606-107926449) |
Aligned organism(s): 66 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
2-246, gnl|bosTau2|chr3 (25912771-25912527) | |
2-246, gnl|Hg17|chr1 (109803263-109803505) | |
2-246, gnl|Mm7|chr3 (107964416-107964173) | |
119-244, gnl|bosTau2|chr22 (38479168-38479292) | |
119-244, gnl|Hg17|chr3 (50248765-50248889) | |
119-244, gnl|Mm7|chr9 (107364672-107364548) | |
287-429, gnl|bosTau2|chr3 (25885108-25884966) | |
287-429, gnl|canFam2|chr6 (45353094-45352934) | |
287-429, gnl|danRer3|chr8 (21760792-21760631) | |
287-429, gnl|dasNov1|scaffold_274382 (454-617) | |
287-429, gnl|echTel1|scaffold_323861 (47163-47000) | |
287-429, gnl|fr1|chrUn (235522778-235522941) | |
287-429, gnl|galGal2|chrUn (10809562-10809405) | |
287-429, gnl|hg17|chr1 (109828545-109828708) | |
287-429, gnl|Hg17|chr1 (109828560-109828702) | |
287-429, gnl|loxAfr1|scaffold_20391 (12720-12577) | |
287-429, gnl|mm7|chr3 (107941988-107941825) | |
287-429, gnl|Mm7|chr3 (107941971-107941829) | |
287-429, gnl|monDom2|scaffold_0 (7032187-7032038) | |
287-429, gnl|oryCun1|scaffold_208853 (123301-123464) | |
287-429, gnl|panTro1|chr1 (108759131-108759294) | |
287-429, gnl|rheMac2|chr1 (112634402-112634565) | |
287-429, gnl|rn3|chr2 (203646720-203646557) | |
287-429, gnl|tetNig1|chr9 (2912464-2912301) | |
287-429, gnl|xenTro1|scaffold_19 (2074825-2074986) | |
588-716, gnl|bosTau2|chr22 (38496401-38496529) | |
588-716, gnl|canFam2|chr20 (42077545-42077403) | |
588-716, gnl|danRer3|chr4 (28245914-28245773) | |
588-716, gnl|dasNov1|scaffold_90962 (7826-7969) | |
588-716, gnl|echTel1|scaffold_264021 (6066-5927) | |
588-716, gnl|fr1|chrUn (102497341-102497486) | |
588-716, gnl|galGal2|chr12 (2814681-2814539) | |
588-716, gnl|hg17|chr3 (50268622-50268764) | |
588-716, gnl|Hg17|chr3 (50268629-50268757) | |
588-716, gnl|loxAfr1|scaffold_49072 (9892-9750) | |
588-716, gnl|mm7|chr9 (107346519-107346341) | |
588-716, gnl|Mm7|chr9 (107346510-107346382) | |
588-716, gnl|monDom2|scaffold_601 (9773-9631) | |
588-716, gnl|oryCun1|scaffold_174716 (41811-41950) | |
588-716, gnl|panTro1|chr2 (51848533-51848675) | |
588-716, gnl|rheMac2|chr2 (86162315-86162173) | |
588-716, gnl|rn3|chr8 (112884283-112884141) | |
588-716, gnl|tetNig1|chr11 (4752296-4752159) | |
588-716, gnl|xenTro1|scaffold_189 (676927-677062) | |
845-1001, gnl|bosTau2|chr18 (25313199-25313355) | |
845-1001, gnl|canFam2|chr2 (62701035-62700877) | |
845-1001, gnl|danRer3|chr18 (29230808-29230650) | |
845-1001, gnl|dasNov1|scaffold_35957 (9199-9357) | |
845-1001, gnl|echTel1|scaffold_180933 (5536-5372) | |
845-1001, gnl|fr1|chrUn (313773306-313773148) | |
845-1001, gnl|galGal2|chr11 (2204161-2204319) | |
845-1001, gnl|hg17|chr16 (54932242-54932400) | |
845-1001, gnl|Hg17|chr16 (54932246-54932402) | |
845-1001, gnl|loxAfr1|scaffold_49072 (9041-8877) | |
845-1001, gnl|mm7|chr8 (92543014-92543172) | |
845-1001, gnl|Mm7|chr8 (92543018-92543174) | |
845-1001, gnl|monDom2|scaffold_35 (22959389-22959547) | |
845-1001, gnl|oryCun1|scaffold_198557 (188846-188703) | |
845-1001, gnl|panTro1|chr18 (49026749-49026907) | |
845-1001, gnl|rheMac2|chr20 (54657213-54657371) | |
845-1001, gnl|rn3|chr19 (11490218-11490060) | |
845-1001, gnl|tetNig1|chr13 (4564525-4564367) | |
845-1001, gnl|xenTro1|scaffold_180 (298782-298624) | |
1211-2403, gnl|bosTau2|chr3 (25869504-25868319) | |
1211-2403, gnl|Hg17|chr1 (109847007-109848176) | |
1211-2403, gnl|Mm7|chr3 (107927606-107926449) |
Expressed library(ies): 39 entry(ies) | More info |
Expressed library(ies): 39 entry(ies) | Help | Less info |
cbl (7.69142) | |
pro (0.512033) | |
mgp (0.461361) | |
fty (0.351679) | |
duo (0.345602) | |
cte (0.29274) | |
lin (0.291206) | |
cst (0.280073) | |
fce (0.271592) | |
lyg (0.266205) | |
cbe (0.239234) | |
med (0.232504) | |
cty (0.20816) | |
tes (0.207814) | |
hea (0.204499) | |
sto (0.179824) | |
ill (0.175593) | |
mcp (0.170648) | |
eye (0.170503) | |
nco (0.161734) | |
eli (0.151814) | |
fat (0.147427) | |
spl (0.143184) | |
hyp (0.142837) | |
lnt (0.142308) | |
csk (0.140746) | |
ute (0.132784) | |
kid (0.129735) | |
ova (0.129132) | |
thg (0.126791) | |
ese (0.126502) | |
bla (0.124347) | |
tra (0.123092) | |
eru (0.120048) | |
pgl (0.118483) | |
ebs (0.118301) | |
ecc (0.115035) | |
jca (0.11396) | |
jej (0.0989218) |
Expressed library(ies): 39 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
cbl (7.69142) | |
pro (0.512033) | |
mgp (0.461361) | |
fty (0.351679) | |
duo (0.345602) | |
cte (0.29274) | |
lin (0.291206) | |
cst (0.280073) | |
fce (0.271592) | |
lyg (0.266205) | |
cbe (0.239234) | |
med (0.232504) | |
cty (0.20816) | |
tes (0.207814) | |
hea (0.204499) | |
sto (0.179824) | |
ill (0.175593) | |
mcp (0.170648) | |
eye (0.170503) | |
nco (0.161734) | |
eli (0.151814) | |
fat (0.147427) | |
spl (0.143184) | |
hyp (0.142837) | |
lnt (0.142308) | |
csk (0.140746) | |
ute (0.132784) | |
kid (0.129735) | |
ova (0.129132) | |
thg (0.126791) | |
ese (0.126502) | |
bla (0.124347) | |
tra (0.123092) | |
eru (0.120048) | |
pgl (0.118483) | |
ebs (0.118301) | |
ecc (0.115035) | |
jca (0.11396) | |
jej (0.0989218) |