Ss1.1-rcbl0_006607.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGTGGTCAGTACTTGAACCTCCACTATTCCTCAAGATTGTAGAACTTTTTAAGGAGGT TGTGGTACATCTTTTGAAACTCTACAAGATCGGCATTCCCCCTTCTGAAAGAAGAATTTT CAACAGTTTTCTTCATACTGCATTAAAGGTTTTAGAAATATTACATAGGGTAAATGAGAA AACAGGACAGATTATACAGTATGATAAATTTTATATACATGAAGTTCAAGAATTGATAGA CATACGGAATGATTATATCAACTGGGTCCAACAGCAGGCCTATGGAATGTTGGCAGATAT CCCTGTTACAATTTGCACATATCCATTTGTATTTGATGCCCAAGCAAAAACTACTCTGTT ACAAACAGATGCAGTCTTACAGATGCAGATGGCTATTGACCAGGCCCACAGACAGAATGT CTCCTCTCTTTTTCTCCCAGTGATTGAATCTGTGAATCCTTGCTTAATTCTAGTGGTGCG TAGAGAAAATATCGTAGGAGATGCAATGGAAGTCCTTAGGAAAACAAAGAATATAGACTA CAAAAAACCACTCAAGGTTATATTTGTTGGAGAAGATGCTGTTGATGCAGGAGGGGTACG CAAAGAATTTTTCTTGCTTATCATGAGGGAATTATTGGATCCTAAATATGGCATGTTTAG GTATTATGAAGATTCCAGGCTCATTTGGTTTTCTGATAAGACATTTGAAGACAGTGATTT GTTCCACTTGATTGGTGTTATCTGTGGATTAGCGATTTATAATTTTACTATTGTGGACCT CCACTTTCCTTTGGCTTTATATAAGAAACTGCTGAAAAAGAAGCCATCCCTGGATGATTT GAAAGAACTCGTGCCTGATGTTGGGAGAAGCATGCAACAGTTACTAGATTATCCAGAAGA TGATGTTGAGGAAACATTTTGTCTTAATTTTACGATCACAGTTGAAAACTTTGGTGCAAC AGAAGTGAAAGAACTGGTTCTAAATGGTGCAGACACAGCTGTTAACAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGTGGTCAGTACTTGAACCTCCACTATTCCTCAAGATTGTAGAACTTTTTAAGGAGGT TGTGGTACATCTTTTGAAACTCTACAAGATCGGCATTCCCCCTTCTGAAAGAAGAATTTT CAACAGTTTTCTTCATACTGCATTAAAGGTTTTAGAAATATTACATAGGGTAAATGAGAA AACAGGACAGATTATACAGTATGATAAATTTTATATACATGAAGTTCAAGAATTGATAGA CATACGGAATGATTATATCAACTGGGTCCAACAGCAGGCCTATGGAATGTTGGCAGATAT CCCTGTTACAATTTGCACATATCCATTTGTATTTGATGCCCAAGCAAAAACTACTCTGTT ACAAACAGATGCAGTCTTACAGATGCAGATGGCTATTGACCAGGCCCACAGACAGAATGT CTCCTCTCTTTTTCTCCCAGTGATTGAATCTGTGAATCCTTGCTTAATTCTAGTGGTGCG TAGAGAAAATATCGTAGGAGATGCAATGGAAGTCCTTAGGAAAACAAAGAATATAGACTA CAAAAAACCACTCAAGGTTATATTTGTTGGAGAAGATGCTGTTGATGCAGGAGGGGTACG CAAAGAATTTTTCTTGCTTATCATGAGGGAATTATTGGATCCTAAATATGGCATGTTTAG GTATTATGAAGATTCCAGGCTCATTTGGTTTTCTGATAAGACATTTGAAGACAGTGATTT GTTCCACTTGATTGGTGTTATCTGTGGATTAGCGATTTATAATTTTACTATTGTGGACCT CCACTTTCCTTTGGCTTTATATAAGAAACTGCTGAAAAAGAAGCCATCCCTGGATGATTT GAAAGAACTCGTGCCTGATGTTGGGAGAAGCATGCAACAGTTACTAGATTATCCAGAAGA TGATGTTGAGGAAACATTTTGTCTTAATTTTACGATCACAGTTGAAAACTTTGGTGCAAC AGAAGTGAAAGAACTGGTTCTAAATGGTGCAGACACAGCTGTTAACAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-172, gnl|bosTau2|chr28 (17221315-17221486) | |
| 1-172, gnl|Hg17|chr10 (69418594-69418423) | |
| 1-172, gnl|Mm7|chr10 (62809295-62809466) | |
| 387-561, gnl|bosTau2|chr28 (17245421-17245595) | |
| 387-561, gnl|canFam2|chr4 (22458461-22458651) | |
| 387-561, gnl|danRer3|chr18 (459361-459181) | |
| 387-561, gnl|dasNov1|scaffold_58415 (10108-9918) | |
| 387-561, gnl|echTel1|scaffold_41941 (1083-893) | |
| 387-561, gnl|fr1|chrUn (200023862-200024042) | |
| 387-561, gnl|galGal2|chr6 (9741642-9741835) | |
| 387-561, gnl|hg17|chr10 (69384723-69384913) | |
| 387-561, gnl|Hg17|chr10 (69384895-69384721) | |
| 387-561, gnl|mm7|chr10 (62826701-62826518) | |
| 387-561, gnl|Mm7|chr10 (62826527-62826701) | |
| 387-561, gnl|monDom2|scaffold_67 (9057600-9057791) | |
| 387-561, gnl|oryCun1|scaffold_182073 (18330-18140) | |
| 387-561, gnl|panTro1|chr8 (70411787-70411977) | |
| 387-561, gnl|rheMac2|chr9 (69295089-69294899) | |
| 387-561, gnl|rn3|chr20 (25668315-25668132) | |
| 387-561, gnl|tetNig1|chr17 (987442-987622) | |
| 387-561, gnl|xenTro1|scaffold_228 (976620-976810) | |
| 699-867, gnl|bosTau2|chr28 (17253751-17253919) | |
| 699-867, gnl|Hg17|chr10 (69370870-69370702) | |
| 699-867, gnl|Mm7|chr10 (62830252-62830420) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-172, gnl|bosTau2|chr28 (17221315-17221486) | |
| 1-172, gnl|Hg17|chr10 (69418594-69418423) | |
| 1-172, gnl|Mm7|chr10 (62809295-62809466) | |
| 387-561, gnl|bosTau2|chr28 (17245421-17245595) | |
| 387-561, gnl|canFam2|chr4 (22458461-22458651) | |
| 387-561, gnl|danRer3|chr18 (459361-459181) | |
| 387-561, gnl|dasNov1|scaffold_58415 (10108-9918) | |
| 387-561, gnl|echTel1|scaffold_41941 (1083-893) | |
| 387-561, gnl|fr1|chrUn (200023862-200024042) | |
| 387-561, gnl|galGal2|chr6 (9741642-9741835) | |
| 387-561, gnl|hg17|chr10 (69384723-69384913) | |
| 387-561, gnl|Hg17|chr10 (69384895-69384721) | |
| 387-561, gnl|mm7|chr10 (62826701-62826518) | |
| 387-561, gnl|Mm7|chr10 (62826527-62826701) | |
| 387-561, gnl|monDom2|scaffold_67 (9057600-9057791) | |
| 387-561, gnl|oryCun1|scaffold_182073 (18330-18140) | |
| 387-561, gnl|panTro1|chr8 (70411787-70411977) | |
| 387-561, gnl|rheMac2|chr9 (69295089-69294899) | |
| 387-561, gnl|rn3|chr20 (25668315-25668132) | |
| 387-561, gnl|tetNig1|chr17 (987442-987622) | |
| 387-561, gnl|xenTro1|scaffold_228 (976620-976810) | |
| 699-867, gnl|bosTau2|chr28 (17253751-17253919) | |
| 699-867, gnl|Hg17|chr10 (69370870-69370702) | |
| 699-867, gnl|Mm7|chr10 (62830252-62830420) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| cbl (0.229595) | |
| spl (0.143184) |