Ss1.1-rcbl0_007293.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTTGATTCAAAATCAAAGGATATATCTAAAATAGCTGCAGATATCACCCAGGCAGTGTC TCTCTCTCAAGGAACTGAGAGAAAAAAAGGTGATCCAGCACATCAGAGGAATGTATAAAG TGGATCTGAGTGCCAGCAGGCACTGGCAGGAGCTTATCCAGCAACTGACGCATGATAGAG CTGTCTGGTATGACCCCATCTACTACCCAACTTCATGGCAGTTGGATCCAACGGAAGGGC CAAATCGAGAGAGGAGGCGTTTACAGAGATGTTACTTAACTATTCCCAATAAGTATCTCC TTAGAGATAGACAAAAATCAGAAGATGTTGTCAAACCACCACTCTCTTACCTATTTGAAG ACAAAACTCATTCTTCTTTCTCTTCTACTGTAAAAGACAAAGCTGCAAGTGAATCAATAA GGGTGAATCGAAGATGTATCAGCGTTGCACCATCTAGAGAGACAGCTGGTGAACTGTTAT TAGGTAAATGTGGAATGTATTTTGTGGAAGACAACGCTTCTGATACAGTTGAAAGTTCCA GCCTTCAGGGAGAATTGGAACCAGCATCATTTTCCTGGACATATGAAGAAATTAAGGAAG TTCACAAACGTTGGTGGCAGTTGAGAGATAATGCTGTAGAAATTTTTTTAACAAATGGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTTGATTCAAAATCAAAGGATATATCTAAAATAGCTGCAGATATCACCCAGGCAGTGTC TCTCTCTCAAGGAACTGAGAGAAAAAAAGGTGATCCAGCACATCAGAGGAATGTATAAAG TGGATCTGAGTGCCAGCAGGCACTGGCAGGAGCTTATCCAGCAACTGACGCATGATAGAG CTGTCTGGTATGACCCCATCTACTACCCAACTTCATGGCAGTTGGATCCAACGGAAGGGC CAAATCGAGAGAGGAGGCGTTTACAGAGATGTTACTTAACTATTCCCAATAAGTATCTCC TTAGAGATAGACAAAAATCAGAAGATGTTGTCAAACCACCACTCTCTTACCTATTTGAAG ACAAAACTCATTCTTCTTTCTCTTCTACTGTAAAAGACAAAGCTGCAAGTGAATCAATAA GGGTGAATCGAAGATGTATCAGCGTTGCACCATCTAGAGAGACAGCTGGTGAACTGTTAT TAGGTAAATGTGGAATGTATTTTGTGGAAGACAACGCTTCTGATACAGTTGAAAGTTCCA GCCTTCAGGGAGAATTGGAACCAGCATCATTTTCCTGGACATATGAAGAAATTAAGGAAG TTCACAAACGTTGGTGGCAGTTGAGAGATAATGCTGTAGAAATTTTTTTAACAAATGGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 5-178, - strand, RNAz p=0.895664 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 5-178, - strand, RNAz p=0.895664 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 5-178, gnl|bosTau2|chr28 (3836812-3836640) | |
| 5-178, gnl|Hg17|chr1 (232223016-232222844) | |
| 5-178, gnl|Mm7|chr13 (13050812-13050984) | |
| 318-422, gnl|bosTau2|chr28 (3834379-3834275) | |
| 318-422, gnl|Hg17|chr1 (232220291-232220187) | |
| 318-422, gnl|Mm7|chr13 (13052281-13052385) | |
| 542-660, gnl|bosTau2|chr28 (3829520-3829402) | |
| 542-660, gnl|canFam2|chr4 (7239579-7239379) | |
| 542-660, gnl|danRer3|chr13 (47718591-47718421) | |
| 542-660, gnl|dasNov1|scaffold_1011 (127858-128058) | |
| 542-660, gnl|echTel1|scaffold_190706 (1662-1461) | |
| 542-660, gnl|fr1|chrUn (236124266-236124429) | |
| 542-660, gnl|galGal2|chr3 (34237790-34237991) | |
| 542-660, gnl|hg17|chr1 (232213362-232213562) | |
| 542-660, gnl|Hg17|chr1 (232213519-232213401) | |
| 542-660, gnl|loxAfr1|scaffold_109087 (5200-4999) | |
| 542-660, gnl|mm7|chr13 (13055643-13055442) | |
| 542-660, gnl|Mm7|chr13 (13055484-13055602) | |
| 542-660, gnl|monDom2|scaffold_13 (49944875-49944676) | |
| 542-660, gnl|panTro1|chr1 (216042780-216042980) | |
| 542-660, gnl|rheMac2|chr1 (221292390-221292190) | |
| 542-660, gnl|rn3|chr17 (66627267-66627468) | |
| 542-660, gnl|tetNig1|chr17 (1954482-1954311) | |
| 542-660, gnl|xenTro1|scaffold_371 (732118-731937) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-178, gnl|bosTau2|chr28 (3836812-3836640) | |
| 5-178, gnl|Hg17|chr1 (232223016-232222844) | |
| 5-178, gnl|Mm7|chr13 (13050812-13050984) | |
| 318-422, gnl|bosTau2|chr28 (3834379-3834275) | |
| 318-422, gnl|Hg17|chr1 (232220291-232220187) | |
| 318-422, gnl|Mm7|chr13 (13052281-13052385) | |
| 542-660, gnl|bosTau2|chr28 (3829520-3829402) | |
| 542-660, gnl|canFam2|chr4 (7239579-7239379) | |
| 542-660, gnl|danRer3|chr13 (47718591-47718421) | |
| 542-660, gnl|dasNov1|scaffold_1011 (127858-128058) | |
| 542-660, gnl|echTel1|scaffold_190706 (1662-1461) | |
| 542-660, gnl|fr1|chrUn (236124266-236124429) | |
| 542-660, gnl|galGal2|chr3 (34237790-34237991) | |
| 542-660, gnl|hg17|chr1 (232213362-232213562) | |
| 542-660, gnl|Hg17|chr1 (232213519-232213401) | |
| 542-660, gnl|loxAfr1|scaffold_109087 (5200-4999) | |
| 542-660, gnl|mm7|chr13 (13055643-13055442) | |
| 542-660, gnl|Mm7|chr13 (13055484-13055602) | |
| 542-660, gnl|monDom2|scaffold_13 (49944875-49944676) | |
| 542-660, gnl|panTro1|chr1 (216042780-216042980) | |
| 542-660, gnl|rheMac2|chr1 (221292390-221292190) | |
| 542-660, gnl|rn3|chr17 (66627267-66627468) | |
| 542-660, gnl|tetNig1|chr17 (1954482-1954311) | |
| 542-660, gnl|xenTro1|scaffold_371 (732118-731937) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.229595) |