Non-Coding RNA Search

Ss1.1-rcbl0_008432.5

Sequence:


               
               GACAGTTTAACCTCTCCTTTGCAGTTAAAGCAAAATGAACACCTTTAAAGACATGCTCCC
CTTATGGCTCCTGCTGTTATGTAGCCTCAGATGTAGAAATCAGAAATCATCTATCACAGC
AAGAGAGAAGAGAAAGGTATTATTAGAGCTGTTATTTTACTCAACTGGGAAACAATGGGA
TTTCTGCCCGCTCCAGCCCAAAGGCTCACTTGGAGTTAGGACTTGGCAAAAGCAGGCAAA
AACACAACGCCTCCATTTTGGGGACCACCCCCCCCCCTTTCATCATATCCGAAAGCCCTA
ATCTTATTTTGACAGCTGTAATTTGGATTTAAAGACTTTCGACAGTAAATGTGAGTCATC
ATCCTTGTGCTTCGACGCTGGAAGAAACAAAACCAACCTCATGTCACCCAGAAAAACAAA
CCTGTCCTTTCAGGCAAACTCCAGCTGGGCCTCACATCCCTGCTCCCCCCAAGAGCTTCA
CTCTTTTTCAATCAGTTCTCCTCATCACAAATCAGATTTCGTTTGCTTTTGCAAAGGGAA
AAGAAAGCAGGAGGATCCCCCAACCAAAGCCTAAAAACATAAGTAAATCTGACCAAAGGA
GGTTGATAAACTAATGAATAAATAAGCATGAGCAAATAATGCCCTAATCTTGCAGAGGGC
TGTAGCCACTTCCAAACGGCTGTCGTGTCCCCGTGTTCTTGATGAGAACTCCCCACCAGA
GGGGACTCTCCCAGGGAGAGATCTAGTTTCAAACAGCTAGGTCAGTGATTTCCCAACTTG
AGTTGAGATCCAAATCCCCCCAAAGCGCTTGTCAAAACGCACACTCCTAGGCCACATCCC
TAAGAGTCCCTGATTCAGTAGGTCTGGGGTTAAGCCTGAAAATCTGCATTCTTAACAAGT
CTCCCCACCCCAAAAGCTGAAGCCGCTGTCGGGGGGACCACACTTTGAGAACCGCTGTCC
CAAATGCCTGTGAAAATAGGAAAGCAGTGAAGAAGCTGTACGAGGTTCACACCCATTTCC
TCACCTCGCCCCCCACGTGTAAGAATTCTTTCACAACCGGCATTCTCCACTCACATGCAG
TCAGCTGGTTATCCCGTGTCTCTCATGGGGCTCTACTCAACCAGGATTCCTTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAGTTTAACCTCTCCTTTGCAGTTAAAGCAAAATGAACACCTTTAAAGACATGCTCCC
CTTATGGCTCCTGCTGTTATGTAGCCTCAGATGTAGAAATCAGAAATCATCTATCACAGC
AAGAGAGAAGAGAAAGGTATTATTAGAGCTGTTATTTTACTCAACTGGGAAACAATGGGA
TTTCTGCCCGCTCCAGCCCAAAGGCTCACTTGGAGTTAGGACTTGGCAAAAGCAGGCAAA
AACACAACGCCTCCATTTTGGGGACCACCCCCCCCCCTTTCATCATATCCGAAAGCCCTA
ATCTTATTTTGACAGCTGTAATTTGGATTTAAAGACTTTCGACAGTAAATGTGAGTCATC
ATCCTTGTGCTTCGACGCTGGAAGAAACAAAACCAACCTCATGTCACCCAGAAAAACAAA
CCTGTCCTTTCAGGCAAACTCCAGCTGGGCCTCACATCCCTGCTCCCCCCAAGAGCTTCA
CTCTTTTTCAATCAGTTCTCCTCATCACAAATCAGATTTCGTTTGCTTTTGCAAAGGGAA
AAGAAAGCAGGAGGATCCCCCAACCAAAGCCTAAAAACATAAGTAAATCTGACCAAAGGA
GGTTGATAAACTAATGAATAAATAAGCATGAGCAAATAATGCCCTAATCTTGCAGAGGGC
TGTAGCCACTTCCAAACGGCTGTCGTGTCCCCGTGTTCTTGATGAGAACTCCCCACCAGA
GGGGACTCTCCCAGGGAGAGATCTAGTTTCAAACAGCTAGGTCAGTGATTTCCCAACTTG
AGTTGAGATCCAAATCCCCCCAAAGCGCTTGTCAAAACGCACACTCCTAGGCCACATCCC
TAAGAGTCCCTGATTCAGTAGGTCTGGGGTTAAGCCTGAAAATCTGCATTCTTAACAAGT
CTCCCCACCCCAAAAGCTGAAGCCGCTGTCGGGGGGACCACACTTTGAGAACCGCTGTCC
CAAATGCCTGTGAAAATAGGAAAGCAGTGAAGAAGCTGTACGAGGTTCACACCCATTTCC
TCACCTCGCCCCCCACGTGTAAGAATTCTTTCACAACCGGCATTCTCCACTCACATGCAG
TCAGCTGGTTATCCCGTGTCTCTCATGGGGCTCTACTCAACCAGGATTCCTTTTTTTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               696-855, - strand, RNAz p=0.992635

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               696-855, - strand, RNAz p=0.992635

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               72-867, gnl|bosTau2|chr14 (39814598-39815389)
               

               
               72-867, gnl|Hg17|chr8 (99033690-99032901)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               72-867, gnl|bosTau2|chr14 (39814598-39815389)
               

               
               72-867, gnl|Hg17|chr8 (99033690-99032901)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.229595)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)

	72-867, gnl\|bosTau2\|chr14 (39814598-39815389)
	72-867, gnl\|Hg17\|chr8 (99033690-99032901)