Non-Coding RNA Search

Ss1.1-rcbl0_008518.5

Sequence:


               
               CAACACAGGATCCTTAACCCACCCACTACGTGAGGCCAGAGACCGAACCTGCAACCTCAT
GGTTCCTAGTTGGATTCTTTTCCGCTGTGCCACAAAGGGAACTCCGAACACATTTTCTAT
TGAGTCCTGAAATGCCACCTTAAGGGTGGGATTTCTTGGACCCTGTTTTCCTTGAACTCT
GATCCCGAGTTCCTTGCATTGAATCATCCTGACGCAAAACCCTGCAATGACATCTCACCT
CAGCACAAGCCAGCCATTTGCCCACAGCTTTGCCAAGCACACTGACCTCTCAGATGTAAA
CTCAAAAGGTAGGAGTGTTTGTCTTAGCTATTACTGCCAGCAGCAGCACACTAGAAGTGC
TTTGAATACTACATGAAATTGCAGGTAGAGAATCAGACCAAGTCTAATTCCTGGTTCAGG
GTTCTTCAGAGGCCAAGAGCTTACTGGCATATATGATGACTGAACTTTTTTCCCCGACAG
ATCGACCATGTTGATCAAACTCTCTAAGCCAGTTTCTGTCTGATATGCCAGTTTGAGCAG
CTCTTGTCCTCCACTCCCTTGGGTATCTAGCTGATGGAGCTCATGTTTCATTGTTTTCAT
CTTAGGTTTACTAGTGGCAGAAAGCAGACTTTGAATGGACTATCATTTGGAAAGAATGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACACAGGATCCTTAACCCACCCACTACGTGAGGCCAGAGACCGAACCTGCAACCTCAT
GGTTCCTAGTTGGATTCTTTTCCGCTGTGCCACAAAGGGAACTCCGAACACATTTTCTAT
TGAGTCCTGAAATGCCACCTTAAGGGTGGGATTTCTTGGACCCTGTTTTCCTTGAACTCT
GATCCCGAGTTCCTTGCATTGAATCATCCTGACGCAAAACCCTGCAATGACATCTCACCT
CAGCACAAGCCAGCCATTTGCCCACAGCTTTGCCAAGCACACTGACCTCTCAGATGTAAA
CTCAAAAGGTAGGAGTGTTTGTCTTAGCTATTACTGCCAGCAGCAGCACACTAGAAGTGC
TTTGAATACTACATGAAATTGCAGGTAGAGAATCAGACCAAGTCTAATTCCTGGTTCAGG
GTTCTTCAGAGGCCAAGAGCTTACTGGCATATATGATGACTGAACTTTTTTCCCCGACAG
ATCGACCATGTTGATCAAACTCTCTAAGCCAGTTTCTGTCTGATATGCCAGTTTGAGCAG
CTCTTGTCCTCCACTCCCTTGGGTATCTAGCTGATGGAGCTCATGTTTCATTGTTTTCAT
CTTAGGTTTACTAGTGGCAGAAAGCAGACTTTGAATGGACTATCATTTGGAAAGAATGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               428-530, + strand, RNAz p=0.924099

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               428-530, + strand, RNAz p=0.924099

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               428-646, gnl|bosTau2|chr13 (57751871-57752096)
               

               
               428-646, gnl|Hg17|chr20 (47330233-47330469)
               

               
               428-646, gnl|Mm7|chr2 (166805655-166805852)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               428-646, gnl|bosTau2|chr13 (57751871-57752096)
               

               
               428-646, gnl|Hg17|chr20 (47330233-47330469)
               

               
               428-646, gnl|Mm7|chr2 (166805655-166805852)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cbl (0.229595)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)
               

               
               ese (0.126502)

	428-646, gnl\|bosTau2\|chr13 (57751871-57752096)
	428-646, gnl\|Hg17\|chr20 (47330233-47330469)
	428-646, gnl\|Mm7\|chr2 (166805655-166805852)