Ss1.1-rcbl0_008528.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAAGAGCCTGTCCTTGGATTCCTTTCTCCTGAATCACAGCCTGGAGTATACAGTAGCCG CTCTTTCTTCTTGGATAGAGTTCACCCTTGAAAATATCTTCTGGCCAGAACTGAAGCAGA TCACCTGGCTCAGTGCCACCGGGCTGCTGATGGTGGTCTTCGGAGAATGTCTGCGGAAAG CGGCCATGTTTACAGCTGGTTCCAACTTCAACCACGTGGTGCAGAATGAAAAATCGGAAA CCCATACTCTGGTGACCAGCGGAGTCTACGCCTGGTTCCGGCATCCTTCTTATGTCGGGT GGTTTTACTGGAGTATTGGGACCCAGGTGATGCTGTGTAATCCCATCTGCGGCGTGAGCT ATGCCCTGACTGTGTGGCGGTTCTTCCGCGACCGAACAGAAGAGGAGGAGATCTCGCTGA TCCACTTCTTTGGGGAGGAGTACCTGGAGTACAAGAAGCGGGTGCCCACGGGCCTGCCCT TCATCAAAGGGGTCAAAGTGGAGCTATGACAGGCCGGGACCCAGCCGCCTCCTGTCGGCC ACTCTGCGGAATGGATTTTCTTCCCCTTTTTGTATGTCACCAATCGCTCTTCTGGAATAC CACTCAAGACCAAGTGGTCAGAAGGCCTTAGGACCAAAGGACGCCCCCCCCCCAACTCCC CACCACCCCAGAGCAGCCTGCTCTTGGCCTAAATCAAGACAGGACATGGATTAAAAATGG ACAAGAAGCAAATAAGAGCAATACTCAGCGGTGCCCTCCAGACGTGCCCTGGGGGAGCCT GGGCCATGCTCCATCCCCCACGAGGCCAGTGGTAACCAAGACCCCTGGGGAGAGGCGGGC TCGCTCCTGCCAGTGAGCCAGGCTCCCGCGGCAGGAAGGGCATCCGTGCTTGTTAGCGCT AGAAACTCAGTCAGACCCCAACTGTAGCCGAAGACCCCGAGCAGCACAGCTTTAACCTCC TTACTTCTGTCCCCCGCGCATGAGCGTGTCTAAGTTTGAAAGACACTTCCTTGTAAGGCA CTTTGGCTCTTCACAGCTCATGGTATTTACATATCTATTTTTTAAAAAACAGCAGTATGA ACTCAAAGGGGAGTCACTTGGCTTGTGAGCCCCAGCTTTTCTTTGGCAGAAAGGCGGCAC GGACACCCCCAGACGACCGGGCCGAGGCTTTGCATTACCGGGGCTCCACAGGCCAGGGGG ACCGTGGGCCCCTGTGGCTTTTCTGGGTCCCGGTTCCTGCTCCCCGCAAGGGGGGCTGTT ACTGCTGATGGGCCTGTCCCAGAGGTCTCATTTCTCCTTCACCCAAGAGATGCTTCCAGG ACACCTGCTGCGTGCAAGGCGTTCTTAAACCTTGAGAGAGACTGCTCTCCGTTCACTTGG GGTTTATTCTGATTTTACCATAGCTTATATTTTTGCGTTTGGGTTTAAATCTATTATTAA CCATTGATTTCTATGCTCTCTTCTCAAAATTCCATCGTCCCTAATGCCATTTCAAACTGT CTTTTCCAAAGGGGTTTGTTTGAGCATATACAACTACAAAATTCAAGCACGTCAACTCAT GAAAAAAAATAGAGCAAATAATCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAAGAGCCTGTCCTTGGATTCCTTTCTCCTGAATCACAGCCTGGAGTATACAGTAGCCG CTCTTTCTTCTTGGATAGAGTTCACCCTTGAAAATATCTTCTGGCCAGAACTGAAGCAGA TCACCTGGCTCAGTGCCACCGGGCTGCTGATGGTGGTCTTCGGAGAATGTCTGCGGAAAG CGGCCATGTTTACAGCTGGTTCCAACTTCAACCACGTGGTGCAGAATGAAAAATCGGAAA CCCATACTCTGGTGACCAGCGGAGTCTACGCCTGGTTCCGGCATCCTTCTTATGTCGGGT GGTTTTACTGGAGTATTGGGACCCAGGTGATGCTGTGTAATCCCATCTGCGGCGTGAGCT ATGCCCTGACTGTGTGGCGGTTCTTCCGCGACCGAACAGAAGAGGAGGAGATCTCGCTGA TCCACTTCTTTGGGGAGGAGTACCTGGAGTACAAGAAGCGGGTGCCCACGGGCCTGCCCT TCATCAAAGGGGTCAAAGTGGAGCTATGACAGGCCGGGACCCAGCCGCCTCCTGTCGGCC ACTCTGCGGAATGGATTTTCTTCCCCTTTTTGTATGTCACCAATCGCTCTTCTGGAATAC CACTCAAGACCAAGTGGTCAGAAGGCCTTAGGACCAAAGGACGCCCCCCCCCCAACTCCC CACCACCCCAGAGCAGCCTGCTCTTGGCCTAAATCAAGACAGGACATGGATTAAAAATGG ACAAGAAGCAAATAAGAGCAATACTCAGCGGTGCCCTCCAGACGTGCCCTGGGGGAGCCT GGGCCATGCTCCATCCCCCACGAGGCCAGTGGTAACCAAGACCCCTGGGGAGAGGCGGGC TCGCTCCTGCCAGTGAGCCAGGCTCCCGCGGCAGGAAGGGCATCCGTGCTTGTTAGCGCT AGAAACTCAGTCAGACCCCAACTGTAGCCGAAGACCCCGAGCAGCACAGCTTTAACCTCC TTACTTCTGTCCCCCGCGCATGAGCGTGTCTAAGTTTGAAAGACACTTCCTTGTAAGGCA CTTTGGCTCTTCACAGCTCATGGTATTTACATATCTATTTTTTAAAAAACAGCAGTATGA ACTCAAAGGGGAGTCACTTGGCTTGTGAGCCCCAGCTTTTCTTTGGCAGAAAGGCGGCAC GGACACCCCCAGACGACCGGGCCGAGGCTTTGCATTACCGGGGCTCCACAGGCCAGGGGG ACCGTGGGCCCCTGTGGCTTTTCTGGGTCCCGGTTCCTGCTCCCCGCAAGGGGGGCTGTT ACTGCTGATGGGCCTGTCCCAGAGGTCTCATTTCTCCTTCACCCAAGAGATGCTTCCAGG ACACCTGCTGCGTGCAAGGCGTTCTTAAACCTTGAGAGAGACTGCTCTCCGTTCACTTGG GGTTTATTCTGATTTTACCATAGCTTATATTTTTGCGTTTGGGTTTAAATCTATTATTAA CCATTGATTTCTATGCTCTCTTCTCAAAATTCCATCGTCCCTAATGCCATTTCAAACTGT CTTTTCCAAAGGGGTTTGTTTGAGCATATACAACTACAAAATTCAAGCACGTCAACTCAT GAAAAAAAATAGAGCAAATAATCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1186-1298, + strand, RNAz p=0.738957 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1186-1298, + strand, RNAz p=0.738957 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC028168, + |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 106-336, gnl|bosTau2|chr16 (34919526-34919755) | |
| 106-336, gnl|canFam2|chr5 (63124585-63124815) | |
| 106-336, gnl|danRer3|chr11 (7199748-7199518) | |
| 106-336, gnl|dasNov1|scaffold_108258 (486-717) | |
| 106-336, gnl|echTel1|scaffold_276530 (36521-36751) | |
| 106-336, gnl|fr1|chrUn (245257862-245257633) | |
| 106-336, gnl|galGal2|chr21 (546623-546393) | |
| 106-336, gnl|hg17|chr1 (6226220-6226450) | |
| 106-336, gnl|Hg17|chr1 (6226448-6226219) | |
| 106-336, gnl|mm7|chr4 (151290306-151290076) | |
| 106-336, gnl|Mm7|chr4 (151290076-151290305) | |
| 106-336, gnl|monDom2|scaffold_78 (2265581-2265351) | |
| 106-336, gnl|oryCun1|scaffold_206661 (39305-39075) | |
| 106-336, gnl|panTro1|chr1 (6155614-6155844) | |
| 106-336, gnl|rheMac2|chr1 (9237935-9238165) | |
| 106-336, gnl|rn3|chr5 (169540631-169540401) | |
| 106-336, gnl|tetNig1|chrUn_random (106407663-106407440) | |
| 106-336, gnl|xenTro1|scaffold_46 (784899-785129) | |
| 516-813, gnl|bosTau2|chr16 (34923058-34923360) | |
| 516-813, gnl|canFam2|chr5 (63121802-63122116) | |
| 516-813, gnl|dasNov1|scaffold_208691 (391-665) | |
| 516-813, gnl|echTel1|scaffold_276530 (33726-34007) | |
| 516-813, gnl|hg17|chr1 (6219052-6219365) | |
| 516-813, gnl|Hg17|chr1 (6219358-6219055) | |
| 516-813, gnl|loxAfr1|scaffold_43336 (16814-17146) | |
| 516-813, gnl|mm7|chr4 (151293083-151292790) | |
| 516-813, gnl|monDom2|scaffold_78 (2268198-2267883) | |
| 516-813, gnl|oryCun1|scaffold_206661 (42298-42068) | |
| 516-813, gnl|panTro1|chr1 (6148420-6148733) | |
| 516-813, gnl|rheMac2|chr1 (9229834-9230147) | |
| 516-813, gnl|rn3|chr5 (169543407-169543115) | |
| 928-1575, gnl|bosTau2|chr16 (34923517-34924148) | |
| 928-1575, gnl|Hg17|chr1 (6218958-6218314) | |
| 928-1575, gnl|Mm7|chr4 (151293172-151293731) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 106-336, gnl|bosTau2|chr16 (34919526-34919755) | |
| 106-336, gnl|canFam2|chr5 (63124585-63124815) | |
| 106-336, gnl|danRer3|chr11 (7199748-7199518) | |
| 106-336, gnl|dasNov1|scaffold_108258 (486-717) | |
| 106-336, gnl|echTel1|scaffold_276530 (36521-36751) | |
| 106-336, gnl|fr1|chrUn (245257862-245257633) | |
| 106-336, gnl|galGal2|chr21 (546623-546393) | |
| 106-336, gnl|hg17|chr1 (6226220-6226450) | |
| 106-336, gnl|Hg17|chr1 (6226448-6226219) | |
| 106-336, gnl|mm7|chr4 (151290306-151290076) | |
| 106-336, gnl|Mm7|chr4 (151290076-151290305) | |
| 106-336, gnl|monDom2|scaffold_78 (2265581-2265351) | |
| 106-336, gnl|oryCun1|scaffold_206661 (39305-39075) | |
| 106-336, gnl|panTro1|chr1 (6155614-6155844) | |
| 106-336, gnl|rheMac2|chr1 (9237935-9238165) | |
| 106-336, gnl|rn3|chr5 (169540631-169540401) | |
| 106-336, gnl|tetNig1|chrUn_random (106407663-106407440) | |
| 106-336, gnl|xenTro1|scaffold_46 (784899-785129) | |
| 516-813, gnl|bosTau2|chr16 (34923058-34923360) | |
| 516-813, gnl|canFam2|chr5 (63121802-63122116) | |
| 516-813, gnl|dasNov1|scaffold_208691 (391-665) | |
| 516-813, gnl|echTel1|scaffold_276530 (33726-34007) | |
| 516-813, gnl|hg17|chr1 (6219052-6219365) | |
| 516-813, gnl|Hg17|chr1 (6219358-6219055) | |
| 516-813, gnl|loxAfr1|scaffold_43336 (16814-17146) | |
| 516-813, gnl|mm7|chr4 (151293083-151292790) | |
| 516-813, gnl|monDom2|scaffold_78 (2268198-2267883) | |
| 516-813, gnl|oryCun1|scaffold_206661 (42298-42068) | |
| 516-813, gnl|panTro1|chr1 (6148420-6148733) | |
| 516-813, gnl|rheMac2|chr1 (9229834-9230147) | |
| 516-813, gnl|rn3|chr5 (169543407-169543115) | |
| 928-1575, gnl|bosTau2|chr16 (34923517-34924148) | |
| 928-1575, gnl|Hg17|chr1 (6218958-6218314) | |
| 928-1575, gnl|Mm7|chr4 (151293172-151293731) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (1.14797) | |
| hyp (0.142837) |