Non-Coding RNA Search

Ss1.1-rcbl0_008578.5

Sequence:


               
               TCCATCATTTCCAAGAAATAAAAGAGCAGATACCAATGAAATATCTTCATCTCCTGAAAT
CAGAGACCAGCATGCTGATGATGCCAAAGAAGACTTTGAAGAGAGAACAGAGATTGAAAT
GAGGACATCCCATGAAGCCAGAGGTGCCCGGGAAGAACCCAGTGTACAGCAGGCACAGCG
GCGGTCGGCTGTCTTTCTGTCATTTAAGTCCCCGATTCCATGCCTGCCCTTGCGCTGGGA
GCAGCAGAGCAAACTCCTCCCAACTGTGGCCGGCATCCCTGCCAGTAAAGTTTCCAAATG
GAGCACAGATGAGGTGTCAGAATTCATACAGAGCTTACCTGGGTGCGAAGAACACGGAAA
GGTATTTAAAGATGAGCAAATTGATGGAGAAGCATTTTTGCTTATGACCCAAACAGACAT
TGTGAAAATTATGAGCATTAAGTTGGGCCCTGCTCTCAAAATTTTCAATTCTATCCTGAT
GTTCAAAGCTGCAGAGAAGAACTCTCACAATGAACTTTGAAGATGGTGGATTCTGATTAC
CATCAGCTTTCTGCTTTAAAGCTCATGTTTTACTCAAAGCACAAGGACAGTTGTCACTCC
TAAGTGAGAAGTCTCCAAAACTCTAAAGAGCAATGCTACCAGATTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCATCATTTCCAAGAAATAAAAGAGCAGATACCAATGAAATATCTTCATCTCCTGAAAT
CAGAGACCAGCATGCTGATGATGCCAAAGAAGACTTTGAAGAGAGAACAGAGATTGAAAT
GAGGACATCCCATGAAGCCAGAGGTGCCCGGGAAGAACCCAGTGTACAGCAGGCACAGCG
GCGGTCGGCTGTCTTTCTGTCATTTAAGTCCCCGATTCCATGCCTGCCCTTGCGCTGGGA
GCAGCAGAGCAAACTCCTCCCAACTGTGGCCGGCATCCCTGCCAGTAAAGTTTCCAAATG
GAGCACAGATGAGGTGTCAGAATTCATACAGAGCTTACCTGGGTGCGAAGAACACGGAAA
GGTATTTAAAGATGAGCAAATTGATGGAGAAGCATTTTTGCTTATGACCCAAACAGACAT
TGTGAAAATTATGAGCATTAAGTTGGGCCCTGCTCTCAAAATTTTCAATTCTATCCTGAT
GTTCAAAGCTGCAGAGAAGAACTCTCACAATGAACTTTGAAGATGGTGGATTCTGATTAC
CATCAGCTTTCTGCTTTAAAGCTCATGTTTTACTCAAAGCACAAGGACAGTTGTCACTCC
TAAGTGAGAAGTCTCCAAAACTCTAAAGAGCAATGCTACCAGATTATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61860416|ref|XP_607644.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61860416|ref|XP_607644.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               198-315, - strand, RNAz p=0.67737
               

               
               375-611, - strand, RNAz p=0.860902

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               198-315, - strand, RNAz p=0.67737
               

               
               375-611, - strand, RNAz p=0.860902

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               142-315, gnl|bosTau2|chr9 (38616786-38616959)
               

               
               142-315, gnl|Hg17|chr6 (130496288-130496461)
               

               
               142-315, gnl|Mm7|chr10 (26032270-26032122)
               


               
               375-648, gnl|bosTau2|chr9 (38621104-38621377)
               

               
               375-648, gnl|Hg17|chr6 (130502446-130502719)
               

               
               375-648, gnl|Mm7|chr10 (26028451-26028178)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               142-315, gnl|bosTau2|chr9 (38616786-38616959)
               

               
               142-315, gnl|Hg17|chr6 (130496288-130496461)
               

               
               142-315, gnl|Mm7|chr10 (26032270-26032122)
               


               
               375-648, gnl|bosTau2|chr9 (38621104-38621377)
               

               
               375-648, gnl|Hg17|chr6 (130502446-130502719)
               

               
               375-648, gnl|Mm7|chr10 (26028451-26028178)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fty (0.17584)
               

               
               che (0.136314)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               che (0.136314)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

	198-315, - strand, RNAz p=0.67737
	375-611, - strand, RNAz p=0.860902

	142-315, gnl\|bosTau2\|chr9 (38616786-38616959)
	142-315, gnl\|Hg17\|chr6 (130496288-130496461)
	142-315, gnl\|Mm7\|chr10 (26032270-26032122)

	375-648, gnl\|bosTau2\|chr9 (38621104-38621377)
	375-648, gnl\|Hg17\|chr6 (130502446-130502719)
	375-648, gnl\|Mm7\|chr10 (26028451-26028178)