Non-Coding RNA Search

Ss1.1-rcbl0_008616.5

Sequence:


               
               AAAAAATTGAAGAGTACATCCAAATATATTTATCAAACATTATTTTTAAAGCGGTGAAAA
CAGTGACATTAAGATTTGTGCTCTAGGGGAAGAGTGGAGCTTACACAAAATATATTTATG
TCAATCTGGCTACTTTTCTAGTATGTTCAGCGGTTCTTGGAAAGAATCCAGCATGAATAC
TATTGAATTGGAGATTCCTGACCAGAATATTGACATAGAAGCACTGCAAGTGGCATTTGG
GTCACTGTATCGTGATGATGTCTTAATAAAGCCCAGTCGAGTCATTGCCATTTTGGCAGC
AGCTTGTATGCTACAGTTGTGGATGTTCCTTCAACTTGTGCCTTCTTGGAATGGGTCTTT
AAAACAGCTTCTGACTGAAACAGATGTCTGGTTTTCTAAGAGGAAAAAAGATTTTGAAGG
TATGACCTTCCTTGAAACTGAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAATTGAAGAGTACATCCAAATATATTTATCAAACATTATTTTTAAAGCGGTGAAAA
CAGTGACATTAAGATTTGTGCTCTAGGGGAAGAGTGGAGCTTACACAAAATATATTTATG
TCAATCTGGCTACTTTTCTAGTATGTTCAGCGGTTCTTGGAAAGAATCCAGCATGAATAC
TATTGAATTGGAGATTCCTGACCAGAATATTGACATAGAAGCACTGCAAGTGGCATTTGG
GTCACTGTATCGTGATGATGTCTTAATAAAGCCCAGTCGAGTCATTGCCATTTTGGCAGC
AGCTTGTATGCTACAGTTGTGGATGTTCCTTCAACTTGTGCCTTCTTGGAATGGGTCTTT
AAAACAGCTTCTGACTGAAACAGATGTCTGGTTTTCTAAGAGGAAAAAAGATTTTGAAGG
TATGACCTTCCTTGAAACTGAGCA

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               1-124, gnl|bosTau2|chr11 (48453560-48453438)
               

               
               1-124, gnl|canFam2|chr10 (71632451-71632363)
               

               
               1-124, gnl|danRer3|chrNA (84412041-84412129)
               

               
               1-124, gnl|dasNov1|scaffold_13997 (11885-11797)
               

               
               1-124, gnl|echTel1|scaffold_318828 (63582-63494)
               

               
               1-124, gnl|fr1|chrUn (107389634-107389546)
               

               
               1-124, gnl|Hg17|chr2 (69976331-69976453)
               

               
               1-124, gnl|hg17|chr5 (177546524-177546612)
               

               
               1-124, gnl|loxAfr1|scaffold_58878 (4773-4683)
               

               
               1-124, gnl|mm7|chr6 (86801160-86801248)
               

               
               1-124, gnl|Mm7|chr6 (86801281-86801159)
               

               
               1-124, gnl|monDom2|scaffold_1 (96708923-96708836)
               

               
               1-124, gnl|oryCun1|scaffold_203244 (242360-242286)
               

               
               1-124, gnl|panTro1|chr4 (185049132-185049220)
               

               
               1-124, gnl|rheMac2|chr6 (174754854-174754942)
               

               
               1-124, gnl|rn3|chr4 (121121661-121121749)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-124, gnl|bosTau2|chr11 (48453560-48453438)
               

               
               1-124, gnl|canFam2|chr10 (71632451-71632363)
               

               
               1-124, gnl|danRer3|chrNA (84412041-84412129)
               

               
               1-124, gnl|dasNov1|scaffold_13997 (11885-11797)
               

               
               1-124, gnl|echTel1|scaffold_318828 (63582-63494)
               

               
               1-124, gnl|fr1|chrUn (107389634-107389546)
               

               
               1-124, gnl|Hg17|chr2 (69976331-69976453)
               

               
               1-124, gnl|hg17|chr5 (177546524-177546612)
               

               
               1-124, gnl|loxAfr1|scaffold_58878 (4773-4683)
               

               
               1-124, gnl|mm7|chr6 (86801160-86801248)
               

               
               1-124, gnl|Mm7|chr6 (86801281-86801159)
               

               
               1-124, gnl|monDom2|scaffold_1 (96708923-96708836)
               

               
               1-124, gnl|oryCun1|scaffold_203244 (242360-242286)
               

               
               1-124, gnl|panTro1|chr4 (185049132-185049220)
               

               
               1-124, gnl|rheMac2|chr6 (174754854-174754942)
               

               
               1-124, gnl|rn3|chr4 (121121661-121121749)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cbl (0.344392)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)

	1-124, gnl\|bosTau2\|chr11 (48453560-48453438)
	1-124, gnl\|canFam2\|chr10 (71632451-71632363)
	1-124, gnl\|danRer3\|chrNA (84412041-84412129)
	1-124, gnl\|dasNov1\|scaffold_13997 (11885-11797)
	1-124, gnl\|echTel1\|scaffold_318828 (63582-63494)
	1-124, gnl\|fr1\|chrUn (107389634-107389546)
	1-124, gnl\|Hg17\|chr2 (69976331-69976453)
	1-124, gnl\|hg17\|chr5 (177546524-177546612)
	1-124, gnl\|loxAfr1\|scaffold_58878 (4773-4683)
	1-124, gnl\|mm7\|chr6 (86801160-86801248)
	1-124, gnl\|Mm7\|chr6 (86801281-86801159)
	1-124, gnl\|monDom2\|scaffold_1 (96708923-96708836)
	1-124, gnl\|oryCun1\|scaffold_203244 (242360-242286)
	1-124, gnl\|panTro1\|chr4 (185049132-185049220)
	1-124, gnl\|rheMac2\|chr6 (174754854-174754942)
	1-124, gnl\|rn3\|chr4 (121121661-121121749)