Non-Coding RNA Search

Ss1.1-rcbl0_008781.5

Sequence:


               
               AATTTTTCTAAATGTGTTTGCCCCTACGTTTTGAATGTATGATACATGTTTTACAAACCT
AAACTCTCTTAATTTTTATGTAGTCATACTTGCTAGTCTTGTAGGATTTTTGGTCCATTC
TAATAAAGTATTCTTTCCTATCAGGTTTAATAAATAGTAAGTTGAAGGTTGGGGTGATAT
TGGTTCCTTGGTTTTTCTTTTTTGCCCTTCTCTTTAATTCATGTAGAATCATTTTGTTTG
TTAAAACTTTTTTTTTAATGAATTATTAACCTTTGGGTTATGCTCTTGATTTGGATGTTC
TTTCCCTTGCTCAGTGCGTTGCAGTGTCTCCTTGCTTATTATTTATAAAGGTCTTCACGT
TATAGGCCTTTGATATTTGCAGATTTAACATTTACAGTTTCAGCTACTCTCAGCTGACTC
CAAGGTCTGTCATTCAGTAATTTGTAGTTTTGCTGAGACTGAAATGTTGCTTGCTTGCTG
CTAGGCTACAAATAGGAACTGATCATGTAAGCGCAAAGAAGGAGCCTATTAGACAGGCCA
GCACCTGCATCTCAACGCAGCTTTGTTTTTCTCTACTTGTCGTCGCGTACACAGTAACTC
TCGAAGTGATAAAAGCTGTTTCTTTGTGAAATATGGGCCCGAAAAGAAAATCAACTGCTA
GTGCTGGTGATGGAAGTGAAGAGAAAATGAAGAGGTCTAAGAAAGTGATGGTTCTTAGCC
AGAAAAATAGACGTTTTGGATAAATTAAAGTGGTTTTGCAGATTCAGGTAAGTTTGTGGT
TGGTTAAACATTGCTACAGTGTTTATCAGTGGTTTATATTTTGGGTACTAGAATTTATTT
TTATAACTATATAAATGATTAGTAATGTATTTTTAGAAGCACTGAGGATTTGAAGATGTC
AGCTGTACTTGACTGACTTTTATGGGAGAAGTTAAATACTTCAGTAGTATTTGAAACCTT
GAGAACTTTGGGAAATCTTGATGTTCTTGCAGTATATAATGTTTATAGTAGTGCCTTATC
CTATTCCCATAATACTTCTGCCCTGTGGCACTCTTAACACATTTAAATAGTTTTAATGTG
TTTTAATGTGTTTTGTTGTACCCTACCCCTGGCATCTAATATTGGTCTTTTTCTTCTCCT
CCCAAATTATGTTCTTTTTATCATACCACAAGAACAATATGGTGTTAAGTTTAAAAGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTTTTCTAAATGTGTTTGCCCCTACGTTTTGAATGTATGATACATGTTTTACAAACCT
AAACTCTCTTAATTTTTATGTAGTCATACTTGCTAGTCTTGTAGGATTTTTGGTCCATTC
TAATAAAGTATTCTTTCCTATCAGGTTTAATAAATAGTAAGTTGAAGGTTGGGGTGATAT
TGGTTCCTTGGTTTTTCTTTTTTGCCCTTCTCTTTAATTCATGTAGAATCATTTTGTTTG
TTAAAACTTTTTTTTTAATGAATTATTAACCTTTGGGTTATGCTCTTGATTTGGATGTTC
TTTCCCTTGCTCAGTGCGTTGCAGTGTCTCCTTGCTTATTATTTATAAAGGTCTTCACGT
TATAGGCCTTTGATATTTGCAGATTTAACATTTACAGTTTCAGCTACTCTCAGCTGACTC
CAAGGTCTGTCATTCAGTAATTTGTAGTTTTGCTGAGACTGAAATGTTGCTTGCTTGCTG
CTAGGCTACAAATAGGAACTGATCATGTAAGCGCAAAGAAGGAGCCTATTAGACAGGCCA
GCACCTGCATCTCAACGCAGCTTTGTTTTTCTCTACTTGTCGTCGCGTACACAGTAACTC
TCGAAGTGATAAAAGCTGTTTCTTTGTGAAATATGGGCCCGAAAAGAAAATCAACTGCTA
GTGCTGGTGATGGAAGTGAAGAGAAAATGAAGAGGTCTAAGAAAGTGATGGTTCTTAGCC
AGAAAAATAGACGTTTTGGATAAATTAAAGTGGTTTTGCAGATTCAGGTAAGTTTGTGGT
TGGTTAAACATTGCTACAGTGTTTATCAGTGGTTTATATTTTGGGTACTAGAATTTATTT
TTATAACTATATAAATGATTAGTAATGTATTTTTAGAAGCACTGAGGATTTGAAGATGTC
AGCTGTACTTGACTGACTTTTATGGGAGAAGTTAAATACTTCAGTAGTATTTGAAACCTT
GAGAACTTTGGGAAATCTTGATGTTCTTGCAGTATATAATGTTTATAGTAGTGCCTTATC
CTATTCCCATAATACTTCTGCCCTGTGGCACTCTTAACACATTTAAATAGTTTTAATGTG
TTTTAATGTGTTTTGTTGTACCCTACCCCTGGCATCTAATATTGGTCTTTTTCTTCTCCT
CCCAAATTATGTTCTTTTTATCATACCACAAGAACAATATGGTGTTAAGTTTAAAAGATC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               375-493, - strand, RNAz p=0.99226

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               375-493, - strand, RNAz p=0.99226

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1200, gnl|bosTau2|chr29 (44942767-44941593)
               

               
               1-1200, gnl|Hg17|chr3 (19986042-19988299)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1200, gnl|bosTau2|chr29 (44942767-44941593)
               

               
               1-1200, gnl|Hg17|chr3 (19986042-19988299)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.229595)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)

	1-1200, gnl\|bosTau2\|chr29 (44942767-44941593)
	1-1200, gnl\|Hg17\|chr3 (19986042-19988299)