Non-Coding RNA Search

Ss1.1-rcbl0_008858.5

Sequence:


               
               GAAATAAAGTCATTTATATTTTGGTTTTCTTTTGTTCCATGTTTAAATGATTTGCTTTGA
GTGGGAAAAGGCTGAAATCTTATCATGTGATTGCTGGTATGTGTAATTATTAATGAAATG
TTCACTCTCAGTCCCTCTCGAGGGTTAGAATTTCAATCACGTGTCAGGTCAAACAGTATT
ATAAACCATATTTTGGGGTGTGAGACAGTATGTTTTCAGATGAAGCTTGCTCCCTGCCGT
TTGTGGCCTGTTCTCTTATGAGTACTAGGTACCAAATTTTAGAAGATTCAGTTTTAAGTT
ATGTTACACTTGAGGCTGGTGAGAAATTCAAATAAACTTTGTGGGAACACTGATTCATGT
TAAGAAAAATGTAAATATCTGTAGCACTTTCTTGCAGTTAATTTGAAAACTTTGCTGAAC
ATTATTTTGTCAGTGGTTTTTTTGATTTAAAAAAGCATGTGATTTTAATTTTATAATTGT
TTTGACAAGCATAATTTACTTGGACAACTTTGTAGGTAGCCTTAACTTCTGGCCAAGTTT
GTTTTTTATATAAATATGTATACATATATATTATGTATGGTTGTAAATTCAAATATACTT
ATCACATGAATGTGTTACTGTATACAGAACTCTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAATAAAGTCATTTATATTTTGGTTTTCTTTTGTTCCATGTTTAAATGATTTGCTTTGA
GTGGGAAAAGGCTGAAATCTTATCATGTGATTGCTGGTATGTGTAATTATTAATGAAATG
TTCACTCTCAGTCCCTCTCGAGGGTTAGAATTTCAATCACGTGTCAGGTCAAACAGTATT
ATAAACCATATTTTGGGGTGTGAGACAGTATGTTTTCAGATGAAGCTTGCTCCCTGCCGT
TTGTGGCCTGTTCTCTTATGAGTACTAGGTACCAAATTTTAGAAGATTCAGTTTTAAGTT
ATGTTACACTTGAGGCTGGTGAGAAATTCAAATAAACTTTGTGGGAACACTGATTCATGT
TAAGAAAAATGTAAATATCTGTAGCACTTTCTTGCAGTTAATTTGAAAACTTTGCTGAAC
ATTATTTTGTCAGTGGTTTTTTTGATTTAAAAAAGCATGTGATTTTAATTTTATAATTGT
TTTGACAAGCATAATTTACTTGGACAACTTTGTAGGTAGCCTTAACTTCTGGCCAAGTTT
GTTTTTTATATAAATATGTATACATATATATTATGTATGGTTGTAAATTCAAATATACTT
ATCACATGAATGTGTTACTGTATACAGAACTCTTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               488-596, - strand, RNAz p=0.872753

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               488-596, - strand, RNAz p=0.872753

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-636, gnl|bosTau2|chr26 (17774020-17774661)
               

               
               1-636, gnl|canFam2|chr28 (19348997-19349563)
               

               
               1-636, gnl|dasNov1|scaffold_24116 (16824-16257)
               

               
               1-636, gnl|echTel1|scaffold_320644 (53129-53685)
               

               
               1-636, gnl|galGal2|chr6 (23189514-23190142)
               

               
               1-636, gnl|hg17|chr10 (105776537-105777111)
               

               
               1-636, gnl|Hg17|chr10 (105776553-105777201)
               

               
               1-636, gnl|loxAfr1|scaffold_5312 (52638-53186)
               

               
               1-636, gnl|mm7|chr19 (47543561-47544088)
               

               
               1-636, gnl|Mm7|chr19 (47543577-47544180)
               

               
               1-636, gnl|monDom2|scaffold_14 (59168619-59168024)
               

               
               1-636, gnl|oryCun1|scaffold_198541 (58553-59110)
               

               
               1-636, gnl|panTro1|chr8 (107577848-107578422)
               

               
               1-636, gnl|rheMac2|chr9 (103725243-103725818)
               

               
               1-636, gnl|rn3|chr1 (253272795-253273335)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-636, gnl|bosTau2|chr26 (17774020-17774661)
               

               
               1-636, gnl|canFam2|chr28 (19348997-19349563)
               

               
               1-636, gnl|dasNov1|scaffold_24116 (16824-16257)
               

               
               1-636, gnl|echTel1|scaffold_320644 (53129-53685)
               

               
               1-636, gnl|galGal2|chr6 (23189514-23190142)
               

               
               1-636, gnl|hg17|chr10 (105776537-105777111)
               

               
               1-636, gnl|Hg17|chr10 (105776553-105777201)
               

               
               1-636, gnl|loxAfr1|scaffold_5312 (52638-53186)
               

               
               1-636, gnl|mm7|chr19 (47543561-47544088)
               

               
               1-636, gnl|Mm7|chr19 (47543577-47544180)
               

               
               1-636, gnl|monDom2|scaffold_14 (59168619-59168024)
               

               
               1-636, gnl|oryCun1|scaffold_198541 (58553-59110)
               

               
               1-636, gnl|panTro1|chr8 (107577848-107578422)
               

               
               1-636, gnl|rheMac2|chr9 (103725243-103725818)
               

               
               1-636, gnl|rn3|chr1 (253272795-253273335)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               vin (0.332557)
               

               
               mgp (0.230681)
               

               
               cbl (0.229595)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               mgp (0.230681)
               

               
               cbl (0.229595)
               

               
               mga (0.160205)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)

	1-636, gnl\|bosTau2\|chr26 (17774020-17774661)
	1-636, gnl\|canFam2\|chr28 (19348997-19349563)
	1-636, gnl\|dasNov1\|scaffold_24116 (16824-16257)
	1-636, gnl\|echTel1\|scaffold_320644 (53129-53685)
	1-636, gnl\|galGal2\|chr6 (23189514-23190142)
	1-636, gnl\|hg17\|chr10 (105776537-105777111)
	1-636, gnl\|Hg17\|chr10 (105776553-105777201)
	1-636, gnl\|loxAfr1\|scaffold_5312 (52638-53186)
	1-636, gnl\|mm7\|chr19 (47543561-47544088)
	1-636, gnl\|Mm7\|chr19 (47543577-47544180)
	1-636, gnl\|monDom2\|scaffold_14 (59168619-59168024)
	1-636, gnl\|oryCun1\|scaffold_198541 (58553-59110)
	1-636, gnl\|panTro1\|chr8 (107577848-107578422)
	1-636, gnl\|rheMac2\|chr9 (103725243-103725818)
	1-636, gnl\|rn3\|chr1 (253272795-253273335)

	vin (0.332557)
	mgp (0.230681)
	cbl (0.229595)
	mga (0.160205)
	fat (0.147427)
	liv (0.146284)
	lin (0.145603)
	lyg (0.133103)
	thg (0.126791)