Non-Coding RNA Search

Ss1.1-rcbl0_009028.5

Sequence:


               
               CTAGACTTGAGCCTGTTTCCTTAACTGACGAATGGGTGTCTGGATAGCCCCAATCTCCCC
AGCTTGTGTTAAGGGTTGAGCTGAGGCAGGGTGCGGTGGCGCTGCGAAGGCAGGAGGCAA
GTTTTAATAAACATTAATTAGTATTAATATATCACTAGTAAAATGATTAATACAACAATG
AATATATGGTGAGCGCTCAAATGCTGCTGGTGGAGAGAGCGAAACCCTCAGCCCCTTTCT
CCAACGGAGCCTCACTTTCTCCGTATGTCAAATAGGCATACCCTCTTCCCATCATACGAA
AAGCACTTTGAGATGCGAGCGGGAGCCTCCAGAGCGCTTCCCGCCCTCTGCCTCAGTTGC
CCCTGGCCAGCCAAAGCCCCCACCCCGACACGAAGGCTGGGTTCACTCCGCCAGCGCCCT
CCTCCCGCCCGCGCTGGTGCCTCACCTGGAGCCCACGGCGTCGCAGGAGACTTGGCTCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAGACTTGAGCCTGTTTCCTTAACTGACGAATGGGTGTCTGGATAGCCCCAATCTCCCC
AGCTTGTGTTAAGGGTTGAGCTGAGGCAGGGTGCGGTGGCGCTGCGAAGGCAGGAGGCAA
GTTTTAATAAACATTAATTAGTATTAATATATCACTAGTAAAATGATTAATACAACAATG
AATATATGGTGAGCGCTCAAATGCTGCTGGTGGAGAGAGCGAAACCCTCAGCCCCTTTCT
CCAACGGAGCCTCACTTTCTCCGTATGTCAAATAGGCATACCCTCTTCCCATCATACGAA
AAGCACTTTGAGATGCGAGCGGGAGCCTCCAGAGCGCTTCCCGCCCTCTGCCTCAGTTGC
CCCTGGCCAGCCAAAGCCCCCACCCCGACACGAAGGCTGGGTTCACTCCGCCAGCGCCCT
CCTCCCGCCCGCGCTGGTGCCTCACCTGGAGCCCACGGCGTCGCAGGAGACTTGGCTCGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               337-442, - strand, RNAz p=0.978794

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               337-442, - strand, RNAz p=0.978794

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               2-177, gnl|bosTau2|chr7 (4371318-4371495)
               

               
               2-177, gnl|Hg17|chr19 (18070144-18069972)
               


               
               203-480, gnl|bosTau2|chr7 (4371576-4371867)
               

               
               203-480, gnl|canFam2|chr20 (47880279-47879832)
               

               
               203-480, gnl|echTel1|scaffold_276425 (39114-39593)
               

               
               203-480, gnl|hg17|chr19 (18069488-18069956)
               

               
               203-480, gnl|Hg17|chr19 (18069920-18069607)
               

               
               203-480, gnl|loxAfr1|scaffold_59135 (4037-3584)
               

               
               203-480, gnl|mm7|chr8 (69259602-69259220)
               

               
               203-480, gnl|Mm7|chr8 (69259222-69259482)
               

               
               203-480, gnl|panTro1|chr20 (19061303-19061771)
               

               
               203-480, gnl|rheMac2|chr19 (17670043-17670520)
               

               
               203-480, gnl|rn3|chr16 (19141973-19142371)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-177, gnl|bosTau2|chr7 (4371318-4371495)
               

               
               2-177, gnl|Hg17|chr19 (18070144-18069972)
               


               
               203-480, gnl|bosTau2|chr7 (4371576-4371867)
               

               
               203-480, gnl|canFam2|chr20 (47880279-47879832)
               

               
               203-480, gnl|echTel1|scaffold_276425 (39114-39593)
               

               
               203-480, gnl|hg17|chr19 (18069488-18069956)
               

               
               203-480, gnl|Hg17|chr19 (18069920-18069607)
               

               
               203-480, gnl|loxAfr1|scaffold_59135 (4037-3584)
               

               
               203-480, gnl|mm7|chr8 (69259602-69259220)
               

               
               203-480, gnl|Mm7|chr8 (69259222-69259482)
               

               
               203-480, gnl|panTro1|chr20 (19061303-19061771)
               

               
               203-480, gnl|rheMac2|chr19 (17670043-17670520)
               

               
               203-480, gnl|rn3|chr16 (19141973-19142371)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.573987)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.573987)

	2-177, gnl\|bosTau2\|chr7 (4371318-4371495)
	2-177, gnl\|Hg17\|chr19 (18070144-18069972)

	203-480, gnl\|bosTau2\|chr7 (4371576-4371867)
	203-480, gnl\|canFam2\|chr20 (47880279-47879832)
	203-480, gnl\|echTel1\|scaffold_276425 (39114-39593)
	203-480, gnl\|hg17\|chr19 (18069488-18069956)
	203-480, gnl\|Hg17\|chr19 (18069920-18069607)
	203-480, gnl\|loxAfr1\|scaffold_59135 (4037-3584)
	203-480, gnl\|mm7\|chr8 (69259602-69259220)
	203-480, gnl\|Mm7\|chr8 (69259222-69259482)
	203-480, gnl\|panTro1\|chr20 (19061303-19061771)
	203-480, gnl\|rheMac2\|chr19 (17670043-17670520)
	203-480, gnl\|rn3\|chr16 (19141973-19142371)