Non-Coding RNA Search

Ss1.1-rcbl0_009962.5

Sequence:


               
               TTTATTTTCTTTGTTCAGGAATTTAATCTGATCGATAGGCGTGAGTTGGCACCTCTTCAG
GAATTAATTGAGAAGCTTGGATCGAAAGACAGATAAATTTTTCTTCTACAACACAGTTAC
CCTCTTTGCTTCATCTACTGCTAGAGCTATCTCGTTGCTATCTGTTATAGACTAGTAATA
CACAAACTTTAAGAAAAAGGATAAAAAGACACGTATTATCTGTGTCTGCTGATAAAATTG
TCCCAAAGGTAGGTTGACCTAACACCTTCAGAGTGAGAAACTCAGGACACAGCTGACTCT
CTGAGGCACTATGTGACCACTGCTATTATTGCCACAGAATTGTACTTGGTCGTAATATAT
GATGGCTAACCTGCGGTTTATTAGTTTACTTATTCTTTTGCTGAAGAAAATGGTTCTGTT
TCAGGTGACAGCATGATGGATATTAAGAATTTCCACCAATAATTTATTAACAAATGTCCA
GAACAGATTTCCTGATAATACAATCAGATCAGTTTTATTCTGCTTTTATTTTACAAACAG
AAGAGATGTTTGGAAATTTCCTTAAGATTTAGAACATTTGTGTCACTTTGGATACCCCTT
TAGTTTGAAGTTTGTATGCTAGTGTTTTTATAGATAAAAATATATATGTATATTTTTTCA
AAATTCATAGTTACAGTTTACATCATCATATGACGTGGTATGGGAGTAACCAAAGTTATT
TCTAAAATGACTCTTTTTTAATCTTTATTTGGGATTTTATTCACATGAGCCTATCTAAAT
TTTTAGGCGTGTGTATCAGATAACTTTTTTTAAGGCATCTAAGGACTATCCTGCAGATCT
TTACCTTGAAATGCTTCATTCAGATTAATTTTAATATGTAGGTTTTGGCTGGGAAAAGGA
GACTTCCCAAAAATGATGACAAACTTGGGTCTCAAAAACCACATTTTCATTTATGTTTTT
GTTTCAGAAGCCTTGAACTTTGGATAGGAGAATGAAAGTACTCATAGTACTTGATTATTT
TGTTTTGAATTTTCCTTTAAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATTTTCTTTGTTCAGGAATTTAATCTGATCGATAGGCGTGAGTTGGCACCTCTTCAG
GAATTAATTGAGAAGCTTGGATCGAAAGACAGATAAATTTTTCTTCTACAACACAGTTAC
CCTCTTTGCTTCATCTACTGCTAGAGCTATCTCGTTGCTATCTGTTATAGACTAGTAATA
CACAAACTTTAAGAAAAAGGATAAAAAGACACGTATTATCTGTGTCTGCTGATAAAATTG
TCCCAAAGGTAGGTTGACCTAACACCTTCAGAGTGAGAAACTCAGGACACAGCTGACTCT
CTGAGGCACTATGTGACCACTGCTATTATTGCCACAGAATTGTACTTGGTCGTAATATAT
GATGGCTAACCTGCGGTTTATTAGTTTACTTATTCTTTTGCTGAAGAAAATGGTTCTGTT
TCAGGTGACAGCATGATGGATATTAAGAATTTCCACCAATAATTTATTAACAAATGTCCA
GAACAGATTTCCTGATAATACAATCAGATCAGTTTTATTCTGCTTTTATTTTACAAACAG
AAGAGATGTTTGGAAATTTCCTTAAGATTTAGAACATTTGTGTCACTTTGGATACCCCTT
TAGTTTGAAGTTTGTATGCTAGTGTTTTTATAGATAAAAATATATATGTATATTTTTTCA
AAATTCATAGTTACAGTTTACATCATCATATGACGTGGTATGGGAGTAACCAAAGTTATT
TCTAAAATGACTCTTTTTTAATCTTTATTTGGGATTTTATTCACATGAGCCTATCTAAAT
TTTTAGGCGTGTGTATCAGATAACTTTTTTTAAGGCATCTAAGGACTATCCTGCAGATCT
TTACCTTGAAATGCTTCATTCAGATTAATTTTAATATGTAGGTTTTGGCTGGGAAAAGGA
GACTTCCCAAAAATGATGACAAACTTGGGTCTCAAAAACCACATTTTCATTTATGTTTTT
GTTTCAGAAGCCTTGAACTTTGGATAGGAGAATGAAAGTACTCATAGTACTTGATTATTT
TGTTTTGAATTTTCCTTTAAAAAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1044, gnl|bosTau2|chr11 (9668565-9669601)
               

               
               1-1044, gnl|Hg17|chr2 (74295445-74294400)
               

               
               1-1044, gnl|Mm7|chr6 (83365529-83366568)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1044, gnl|bosTau2|chr11 (9668565-9669601)
               

               
               1-1044, gnl|Hg17|chr2 (74295445-74294400)
               

               
               1-1044, gnl|Mm7|chr6 (83365529-83366568)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               cbl (0.344392)
               

               
               vin (0.332557)
               

               
               tra (0.246184)
               

               
               ecc (0.23007)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)
               

               
               vin (0.332557)
               

               
               tra (0.246184)
               

               
               ecc (0.23007)
               

               
               cty (0.10408)

	1-1044, gnl\|bosTau2\|chr11 (9668565-9669601)
	1-1044, gnl\|Hg17\|chr2 (74295445-74294400)
	1-1044, gnl\|Mm7\|chr6 (83365529-83366568)

	cbl (0.344392)
	vin (0.332557)
	tra (0.246184)
	ecc (0.23007)
	cty (0.10408)