Non-Coding RNA Search

Ss1.1-rcbl0_009963.5

Sequence:


               
               AACTGTAAAGAAGGTGGTGGGAGAGGTACCAATCTTGGGAAAAAGAAGCAACACATTTGT
CATATACCAGGATGTGGTAAAGTCTATGGGAAGACCTCACATCTGAGAGCTCATCTGCGT
TGGCATTCTGGGGAGCGCCCTTTTATTTGTAACTGGATGTTCTGTGGTAAAAGATTTACT
CGAAGTGATGAATTACAGAGGCACAGAAGAACACATACAGGTGAGAAGAAATTTGTTTGT
CCAGAATGTTCAAAACGCTTTATGAGAAGTGATCACCTTGCCAAACATATTAAAACACAT
CAGAATAAGAAAGGTATTCACTCTAGCAGTACAGTGCTGGCATCTGTGGAAGCTGCACGA
GATGATACTTTGATTACTGCAGGAGGAACAACACTTATCCTTGCAAATATTCAACAAGGT
TCTGTTTCAGGGATAGGAACTGTTAATACTTCCACCACCAGCAATCAAGATATCCTTACC
AACACTGAAATACCTTTACAGCTTGTCACAGTTTCTGGAAATGAGACAATGGAGTAAATA
TTACACAAATACTTATTCATTGTGGTTATTTTTATACAGTAGTGAGAAGAATATTGTTCC
TAAGTTCTTAGATATCTTTTTATTGATGTGCAAAAATTTTTGGATTGACAGTAACTTGGT
TATACATGACACTGAAATGCCTTACTTTGTATGATATTCCATAGTATATTAAAAATGGTA
AAATTGCATGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTGTAAAGAAGGTGGTGGGAGAGGTACCAATCTTGGGAAAAAGAAGCAACACATTTGT
CATATACCAGGATGTGGTAAAGTCTATGGGAAGACCTCACATCTGAGAGCTCATCTGCGT
TGGCATTCTGGGGAGCGCCCTTTTATTTGTAACTGGATGTTCTGTGGTAAAAGATTTACT
CGAAGTGATGAATTACAGAGGCACAGAAGAACACATACAGGTGAGAAGAAATTTGTTTGT
CCAGAATGTTCAAAACGCTTTATGAGAAGTGATCACCTTGCCAAACATATTAAAACACAT
CAGAATAAGAAAGGTATTCACTCTAGCAGTACAGTGCTGGCATCTGTGGAAGCTGCACGA
GATGATACTTTGATTACTGCAGGAGGAACAACACTTATCCTTGCAAATATTCAACAAGGT
TCTGTTTCAGGGATAGGAACTGTTAATACTTCCACCACCAGCAATCAAGATATCCTTACC
AACACTGAAATACCTTTACAGCTTGTCACAGTTTCTGGAAATGAGACAATGGAGTAAATA
TTACACAAATACTTATTCATTGTGGTTATTTTTATACAGTAGTGAGAAGAATATTGTTCC
TAAGTTCTTAGATATCTTTTTATTGATGTGCAAAAATTTTTGGATTGACAGTAACTTGGT
TATACATGACACTGAAATGCCTTACTTTGTATGATATTCCATAGTATATTAAAAATGGTA
AAATTGCATGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q68DP2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q68DP2_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               297-416, - strand, RNAz p=0.722602

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               297-416, - strand, RNAz p=0.722602

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               217-732, gnl|bosTau2|chr2 (13901649-13901134)
               

               
               217-732, gnl|Hg17|chr2 (174600496-174599981)
               

               
               217-732, gnl|Mm7|chr2 (72782101-72781586)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               217-732, gnl|bosTau2|chr2 (13901649-13901134)
               

               
               217-732, gnl|Hg17|chr2 (174600496-174599981)
               

               
               217-732, gnl|Mm7|chr2 (72782101-72781586)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cbl (0.344392)
               

               
               nje (0.16592)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)
               

               
               nje (0.16592)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	217-732, gnl\|bosTau2\|chr2 (13901649-13901134)
	217-732, gnl\|Hg17\|chr2 (174600496-174599981)
	217-732, gnl\|Mm7\|chr2 (72782101-72781586)

	cbl (0.344392)
	nje (0.16592)
	liv (0.146284)
	spl (0.143184)
	kid (0.129735)
	thg (0.126791)
	cty (0.10408)
	eje (0.0988338)