Non-Coding RNA Search

Ss1.1-rcbl0_010268.5

Sequence:


               
               CACCACACAGATGGCACAGAGGAGGGTCCCCTCCCTCGTGTGCCCATACAGAGAGGAGCA
CGTAGAGACAGTGGCCTGTGCAAGGGGCTGATGAGAGCTGTTCATGCCTCTCTTTCCTTG
GGGTCTAGGGCCAGGCTGGAGAAGGAGAGGGACCGGGCCCGGGTGACAGGAGGGAGCTCT
GGGGAGGTGGCCCAGGACACACAGAGAGAGCGACGCATCTTCCAGCTGCACATGTGTGAG
CTTTTTCCAAGATGGCTGGAAGGCTGCTCAGAGCCTGTCCCCCTTCATCGAGAAGCTGGC
GGCCTCAGTACACACACTGCGTCAGGCCCAGGAGGAGGAGCTACAGAAGCTGACCCAGCT
CCGGGACTCCCTCCGTGGAACACTGCAGCTTGAGAGCAGAGAGGTCAACCCCTAAATCAC
CCCTGAACAAGTGCCCACCCCCAAGGCCCACCCTGGAGGGAGGGAGAGAGGGGAGACCCC
AAAGGGTCCCCCGGAGAAATCTCCCTGAGTGAGCCCCCTGCAGAATGGGGCGTCTTCCCA
CCCAGATGCCCTGAAGTCTCCTTTGCATGTCCGAGGAACAGGAGACTCTGGGTCGGAAGA
ATTCAGGAGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCACACAGATGGCACAGAGGAGGGTCCCCTCCCTCGTGTGCCCATACAGAGAGGAGCA
CGTAGAGACAGTGGCCTGTGCAAGGGGCTGATGAGAGCTGTTCATGCCTCTCTTTCCTTG
GGGTCTAGGGCCAGGCTGGAGAAGGAGAGGGACCGGGCCCGGGTGACAGGAGGGAGCTCT
GGGGAGGTGGCCCAGGACACACAGAGAGAGCGACGCATCTTCCAGCTGCACATGTGTGAG
CTTTTTCCAAGATGGCTGGAAGGCTGCTCAGAGCCTGTCCCCCTTCATCGAGAAGCTGGC
GGCCTCAGTACACACACTGCGTCAGGCCCAGGAGGAGGAGCTACAGAAGCTGACCCAGCT
CCGGGACTCCCTCCGTGGAACACTGCAGCTTGAGAGCAGAGAGGTCAACCCCTAAATCAC
CCCTGAACAAGTGCCCACCCCCAAGGCCCACCCTGGAGGGAGGGAGAGAGGGGAGACCCC
AAAGGGTCCCCCGGAGAAATCTCCCTGAGTGAGCCCCCTGCAGAATGGGGCGTCTTCCCA
CCCAGATGCCCTGAAGTCTCCTTTGCATGTCCGAGGAACAGGAGACTCTGGGTCGGAAGA
ATTCAGGAGGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               396-612, - strand, RNAz p=0.9998

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               396-612, - strand, RNAz p=0.9998

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               422-599, - strand, RNAmicro p=0.997592

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               422-599, - strand, RNAmicro p=0.997592

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               7-240, gnl|bosTau2|chr2 (82721386-82721622)
               

               
               7-240, gnl|Hg17|chr1 (23514528-23514300)
               

               
               7-240, gnl|Mm7|chr4 (135611564-135611787)
               


               
               317-612, gnl|bosTau2|chr2 (82722634-82722932)
               

               
               317-612, gnl|Hg17|chr1 (23513272-23512980)
               

               
               317-612, gnl|Mm7|chr4 (135612765-135613051)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-240, gnl|bosTau2|chr2 (82721386-82721622)
               

               
               7-240, gnl|Hg17|chr1 (23514528-23514300)
               

               
               7-240, gnl|Mm7|chr4 (135611564-135611787)
               


               
               317-612, gnl|bosTau2|chr2 (82722634-82722932)
               

               
               317-612, gnl|Hg17|chr1 (23513272-23512980)
               

               
               317-612, gnl|Mm7|chr4 (135612765-135613051)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.229595)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)

	7-240, gnl\|bosTau2\|chr2 (82721386-82721622)
	7-240, gnl\|Hg17\|chr1 (23514528-23514300)
	7-240, gnl\|Mm7\|chr4 (135611564-135611787)

	317-612, gnl\|bosTau2\|chr2 (82722634-82722932)
	317-612, gnl\|Hg17\|chr1 (23513272-23512980)
	317-612, gnl\|Mm7\|chr4 (135612765-135613051)