Non-Coding RNA Search

Ss1.1-rcbl0_010364.5

Sequence:


               
               AAAAGGAAAAGCTTTTACTCACCAGGAGCCGCTTTTCAAATTGAGTCCTTAGAGTTTTCT
TTTGCAAGGACGAAATGTACCCTGTACAGCCATCATATGAAACCTCCTAATGGTTTCTAA
ACAGTCAATGGCCGTTAACAAAGTCAGTGTTTTCATGCCCAGCTCGTGGCTTTGTGTTGA
TAGAGAACAGAAAATACAAAGCTTACAGTTTGGGTTTGTCTTTTTGTTGGTTTTGTTGTT
TTTCCATTTCCTTCCCAGTCATGTGGGATGCTTCATACCACTCACTAGAAACCAGCGGAG
GTTGGCTGTACCTGCCTCATCAGAATACCTGATTTCCGGGGTTTTGTGACCATTTTATCT
AGTGCATGTTAGTCTAAGTGTCTTTGTGCTGTTGGAGTATTTTCCCCATTGACTCAAAAA
TCAGAGCTGCATTACTTTAATATCGTACTGATGTGTGTTGATTACGAGGAACCTCCGGTA
AGCAGCCTTATTTTATGGTTTTATTGAAAACGGGTTTGACGAGCATGAAAGCTACCATTG
ATGTCCCTCATGTTTTCAGGGTGTAATTCTCATTTGCTGTCATGCATTGGTCATGCTAAC
CTAGGCACACAACTCAGTTTATACCCTGTCACCCCCAGGAAATATGGCATTGGTTTAATT
CACCATAGCTCCATTGAAAATTTTATCGTAGTTGGGTGGCGAGAGATTCAGTGAACGGGA
GTTTCATACTCAGCCAAAAGTAATAAATTACTAACCATGCTCTCAAACCATACCACCTTG
GTTTTCCCCCTTTTTGGGTGAGCAAATCAGAGAGCCGGTGGTTCAGAAAAGCAAATGGGT
GAGACCAGAATTCTCCCTCCCAATTCAGTTTAACTACTTCTCCCGAAACTTCTAAGGTGG
TTTTTAGAAAGGGAGCTTTTACTGGGTCTAAGTGCATTGCCTAATGAATTTTTTTAGAAA
TATTTTTTCAGCTTTGTTCTCTGTGTAAATCGGATTTTTTTTTCCCCCAGTGTAAATTCT
AGAAGGCCACAGTGTTCAGTCACATTAATGAAAGAAGCGACCAAGGCACATATTTACTCG
TTCAGCCGATGGTAGAAAAAAAATAGCTTTTGTTTCCCAGGCTCCTAATCCCACCCAAAG
ACTACTTTGTACTCCTTCTTTGAGAAAGAAGTACTTTATGGTACCTAGCACGCAAAATCC
CTTCTAGGTGTCTTGAGAAAAAAATGACTGGTGGTGATGAATTGTTACTTAGTTGTTAGG
GTATATTGAGGCCCCATCACATCCTGTTTTAAATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGGAAAAGCTTTTACTCACCAGGAGCCGCTTTTCAAATTGAGTCCTTAGAGTTTTCT
TTTGCAAGGACGAAATGTACCCTGTACAGCCATCATATGAAACCTCCTAATGGTTTCTAA
ACAGTCAATGGCCGTTAACAAAGTCAGTGTTTTCATGCCCAGCTCGTGGCTTTGTGTTGA
TAGAGAACAGAAAATACAAAGCTTACAGTTTGGGTTTGTCTTTTTGTTGGTTTTGTTGTT
TTTCCATTTCCTTCCCAGTCATGTGGGATGCTTCATACCACTCACTAGAAACCAGCGGAG
GTTGGCTGTACCTGCCTCATCAGAATACCTGATTTCCGGGGTTTTGTGACCATTTTATCT
AGTGCATGTTAGTCTAAGTGTCTTTGTGCTGTTGGAGTATTTTCCCCATTGACTCAAAAA
TCAGAGCTGCATTACTTTAATATCGTACTGATGTGTGTTGATTACGAGGAACCTCCGGTA
AGCAGCCTTATTTTATGGTTTTATTGAAAACGGGTTTGACGAGCATGAAAGCTACCATTG
ATGTCCCTCATGTTTTCAGGGTGTAATTCTCATTTGCTGTCATGCATTGGTCATGCTAAC
CTAGGCACACAACTCAGTTTATACCCTGTCACCCCCAGGAAATATGGCATTGGTTTAATT
CACCATAGCTCCATTGAAAATTTTATCGTAGTTGGGTGGCGAGAGATTCAGTGAACGGGA
GTTTCATACTCAGCCAAAAGTAATAAATTACTAACCATGCTCTCAAACCATACCACCTTG
GTTTTCCCCCTTTTTGGGTGAGCAAATCAGAGAGCCGGTGGTTCAGAAAAGCAAATGGGT
GAGACCAGAATTCTCCCTCCCAATTCAGTTTAACTACTTCTCCCGAAACTTCTAAGGTGG
TTTTTAGAAAGGGAGCTTTTACTGGGTCTAAGTGCATTGCCTAATGAATTTTTTTAGAAA
TATTTTTTCAGCTTTGTTCTCTGTGTAAATCGGATTTTTTTTTCCCCCAGTGTAAATTCT
AGAAGGCCACAGTGTTCAGTCACATTAATGAAAGAAGCGACCAAGGCACATATTTACTCG
TTCAGCCGATGGTAGAAAAAAAATAGCTTTTGTTTCCCAGGCTCCTAATCCCACCCAAAG
ACTACTTTGTACTCCTTCTTTGAGAAAGAAGTACTTTATGGTACCTAGCACGCAAAATCC
CTTCTAGGTGTCTTGAGAAAAAAATGACTGGTGGTGATGAATTGTTACTTAGTTGTTAGG
GTATATTGAGGCCCCATCACATCCTGTTTTAAATTA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-211, gnl|bosTau2|chr13 (5743602-5743392)
               

               
               1-211, gnl|Hg17|chr10 (11299812-11300021)
               

               
               1-211, gnl|Mm7|chr2 (6581058-6580852)
               


               
               236-1296, gnl|bosTau2|chr13 (5743392-5742345)
               

               
               236-1296, gnl|Hg17|chr10 (11300021-11301116)
               

               
               236-1296, gnl|Mm7|chr2 (6580852-6579767)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-211, gnl|bosTau2|chr13 (5743602-5743392)
               

               
               1-211, gnl|Hg17|chr10 (11299812-11300021)
               

               
               1-211, gnl|Mm7|chr2 (6581058-6580852)
               


               
               236-1296, gnl|bosTau2|chr13 (5743392-5742345)
               

               
               236-1296, gnl|Hg17|chr10 (11300021-11301116)
               

               
               236-1296, gnl|Mm7|chr2 (6580852-6579767)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	1-211, gnl\|bosTau2\|chr13 (5743602-5743392)
	1-211, gnl\|Hg17\|chr10 (11299812-11300021)
	1-211, gnl\|Mm7\|chr2 (6581058-6580852)

	236-1296, gnl\|bosTau2\|chr13 (5743392-5742345)
	236-1296, gnl\|Hg17\|chr10 (11300021-11301116)
	236-1296, gnl\|Mm7\|chr2 (6580852-6579767)