Non-Coding RNA Search

Ss1.1-rcbl0_010579.5

Sequence:


               
               GAAAGGTCTCATTTCACGCACTCATCTTCCACACGACAGACCAGCGTCCAAAAAACTTTG
TTTTTATTATTAAACCTTGTAGTACAAACCTGAAAAGTAAACAAAAAACTGGCAATAAAC
AACATGAAGTCCTCCCTCCCGAGGGAGGGGTGCAGAGCAGCGCTAATAAATTAAACGTCA
GACCGAAAGCCGTAGGCAGAAGTTCACTGTCCAAGAGGGCGAGTACACAGCAAGGCCATC
AAAACCGGACAAGCACACTGGACAACACGACTCTGCTCAGGTAACTGTTAAATATTCCGA
CACAGTTCAGTCTTCGGCAACAACGAGTGACAAAGGGAATCACAGGACGCTCCTGACAGT
CCCACCGGCGAGCTCAGTGCAACACGGGCAGCTGCGGGATCGGTGAATCCAATTATGAAA
CAAAGAACAGCTTGTGAAAACAGTTTCCCTTTTTTATTCCACACATACTGTACACACAAC
CGGAGAAGGGCAACAGCTACTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGGTCTCATTTCACGCACTCATCTTCCACACGACAGACCAGCGTCCAAAAAACTTTG
TTTTTATTATTAAACCTTGTAGTACAAACCTGAAAAGTAAACAAAAAACTGGCAATAAAC
AACATGAAGTCCTCCCTCCCGAGGGAGGGGTGCAGAGCAGCGCTAATAAATTAAACGTCA
GACCGAAAGCCGTAGGCAGAAGTTCACTGTCCAAGAGGGCGAGTACACAGCAAGGCCATC
AAAACCGGACAAGCACACTGGACAACACGACTCTGCTCAGGTAACTGTTAAATATTCCGA
CACAGTTCAGTCTTCGGCAACAACGAGTGACAAAGGGAATCACAGGACGCTCCTGACAGT
CCCACCGGCGAGCTCAGTGCAACACGGGCAGCTGCGGGATCGGTGAATCCAATTATGAAA
CAAAGAACAGCTTGTGAAAACAGTTTCCCTTTTTTATTCCACACATACTGTACACACAAC
CGGAGAAGGGCAACAGCTACTCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-196, - strand, RNAz p=0.57691

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-196, - strand, RNAz p=0.57691

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004973, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004973, -

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               2-504, gnl|bosTau2|chr23 (36760178-36760672)
               

               
               2-504, gnl|canFam2|chr35 (17746247-17746678)
               

               
               2-504, gnl|danRer3|chr13 (25074065-25074550)
               

               
               2-504, gnl|dasNov1|scaffold_5479 (31846-31432)
               

               
               2-504, gnl|echTel1|scaffold_287820 (5036-5394)
               

               
               2-504, gnl|fr1|chrUn (276193412-276192887)
               

               
               2-504, gnl|galGal2|chr2 (61023724-61024151)
               

               
               2-504, gnl|hg17|chr6 (15629710-15630139)
               

               
               2-504, gnl|Hg17|chr6 (15630277-15629773)
               

               
               2-504, gnl|loxAfr1|scaffold_6062 (52169-51744)
               

               
               2-504, gnl|mm7|chr13 (44370730-44371147)
               

               
               2-504, gnl|Mm7|chr13 (44371269-44370791)
               

               
               2-504, gnl|monDom2|scaffold_3 (104042186-104042618)
               

               
               2-504, gnl|oryCun1|scaffold_176971 (23278-22884)
               

               
               2-504, gnl|panTro1|chr5 (15994246-15994675)
               

               
               2-504, gnl|rheMac2|chr4 (15486041-15486472)
               

               
               2-504, gnl|tetNig1|chr13 (4884127-4883602)
               

               
               2-504, gnl|xenTro1|scaffold_64 (1175846-1175382)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-504, gnl|bosTau2|chr23 (36760178-36760672)
               

               
               2-504, gnl|canFam2|chr35 (17746247-17746678)
               

               
               2-504, gnl|danRer3|chr13 (25074065-25074550)
               

               
               2-504, gnl|dasNov1|scaffold_5479 (31846-31432)
               

               
               2-504, gnl|echTel1|scaffold_287820 (5036-5394)
               

               
               2-504, gnl|fr1|chrUn (276193412-276192887)
               

               
               2-504, gnl|galGal2|chr2 (61023724-61024151)
               

               
               2-504, gnl|hg17|chr6 (15629710-15630139)
               

               
               2-504, gnl|Hg17|chr6 (15630277-15629773)
               

               
               2-504, gnl|loxAfr1|scaffold_6062 (52169-51744)
               

               
               2-504, gnl|mm7|chr13 (44370730-44371147)
               

               
               2-504, gnl|Mm7|chr13 (44371269-44370791)
               

               
               2-504, gnl|monDom2|scaffold_3 (104042186-104042618)
               

               
               2-504, gnl|oryCun1|scaffold_176971 (23278-22884)
               

               
               2-504, gnl|panTro1|chr5 (15994246-15994675)
               

               
               2-504, gnl|rheMac2|chr4 (15486041-15486472)
               

               
               2-504, gnl|tetNig1|chr13 (4884127-4883602)
               

               
               2-504, gnl|xenTro1|scaffold_64 (1175846-1175382)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cbl (0.344392)
               

               
               cly (0.241284)
               

               
               fcc (0.197785)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)
               

               
               cly (0.241284)
               

               
               fcc (0.197785)
               

               
               ldo (0.0970026)

	2-504, gnl\|bosTau2\|chr23 (36760178-36760672)
	2-504, gnl\|canFam2\|chr35 (17746247-17746678)
	2-504, gnl\|danRer3\|chr13 (25074065-25074550)
	2-504, gnl\|dasNov1\|scaffold_5479 (31846-31432)
	2-504, gnl\|echTel1\|scaffold_287820 (5036-5394)
	2-504, gnl\|fr1\|chrUn (276193412-276192887)
	2-504, gnl\|galGal2\|chr2 (61023724-61024151)
	2-504, gnl\|hg17\|chr6 (15629710-15630139)
	2-504, gnl\|Hg17\|chr6 (15630277-15629773)
	2-504, gnl\|loxAfr1\|scaffold_6062 (52169-51744)
	2-504, gnl\|mm7\|chr13 (44370730-44371147)
	2-504, gnl\|Mm7\|chr13 (44371269-44370791)
	2-504, gnl\|monDom2\|scaffold_3 (104042186-104042618)
	2-504, gnl\|oryCun1\|scaffold_176971 (23278-22884)
	2-504, gnl\|panTro1\|chr5 (15994246-15994675)
	2-504, gnl\|rheMac2\|chr4 (15486041-15486472)
	2-504, gnl\|tetNig1\|chr13 (4884127-4883602)
	2-504, gnl\|xenTro1\|scaffold_64 (1175846-1175382)