Non-Coding RNA Search

Ss1.1-rcbl0_010804.5

Sequence:


               
               GGAGCGGCGGGCGGCTGCTGGGTCGAGGGTGGGGGGAGGCAGGGAGTGGGGCTCCGCTGC
CGGGCAGAGCTCCGCGGGGCAAGTCGGCTCCAAGTTTTACTAACTTTGAATTCGTTGCAG
GTTGTGGCTGTAGTTGGCGTCTCCGTTCCTGGGTTTTTGTGAACCTGAGCTGCAGAGGCC
GGTGCCTCCCCTTTGGAAAATGAATGCCTCGGATTGTTCACGACGGGGACGCTGGGCAAT
TTAGGAGCCTCTGCACGTCTTGCTTGCTTTTGCAAATCTGTCCTTCTTGTCTCCTTTTTC
TAGCGCCCCAGAAAGCCAGTGCTGCCCCGCGAGGGAAACAGAGCCGTTGACCATGGTTGC
AACTGGCAGTTTGAGCAGTAAGAACCCAGACAGCATTTCAGAGTTGCTAGACCGTAGCTT
CCACCCGGGCAGCCTACTCAATGATTTTGATTACTGGGATTACGTTGTCCCTGAACCCAA
CCTCAACGAGGTCGTATTTGAGGAGACGACTTGCCAGAGTTTAGTTCAAATGCTGGAGAA
GTGTCTGTCCAAATCTAAGCACACCAAACTCGGTTGCTCTAAAGTCCTTGTTCCGGAGAA
ACTGACCCAGAGGATCGCTCAAGACGTCCTGCGGCTTTCCTCCACGGAGCCCTGTGGCCT
GCGTGGCTGCGTCATACACGTGAACTTGGAAGTTGAAAATGTATGTAAAAAGCTGGATAG
GATTGTGTGTGATCCTAGCGTGGTGCCCACCTTCGAGCTTACGCTTGTGTTTAAGCAGGA
GACCTGCTCGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCGGCGGGCGGCTGCTGGGTCGAGGGTGGGGGGAGGCAGGGAGTGGGGCTCCGCTGC
CGGGCAGAGCTCCGCGGGGCAAGTCGGCTCCAAGTTTTACTAACTTTGAATTCGTTGCAG
GTTGTGGCTGTAGTTGGCGTCTCCGTTCCTGGGTTTTTGTGAACCTGAGCTGCAGAGGCC
GGTGCCTCCCCTTTGGAAAATGAATGCCTCGGATTGTTCACGACGGGGACGCTGGGCAAT
TTAGGAGCCTCTGCACGTCTTGCTTGCTTTTGCAAATCTGTCCTTCTTGTCTCCTTTTTC
TAGCGCCCCAGAAAGCCAGTGCTGCCCCGCGAGGGAAACAGAGCCGTTGACCATGGTTGC
AACTGGCAGTTTGAGCAGTAAGAACCCAGACAGCATTTCAGAGTTGCTAGACCGTAGCTT
CCACCCGGGCAGCCTACTCAATGATTTTGATTACTGGGATTACGTTGTCCCTGAACCCAA
CCTCAACGAGGTCGTATTTGAGGAGACGACTTGCCAGAGTTTAGTTCAAATGCTGGAGAA
GTGTCTGTCCAAATCTAAGCACACCAAACTCGGTTGCTCTAAAGTCCTTGTTCCGGAGAA
ACTGACCCAGAGGATCGCTCAAGACGTCCTGCGGCTTTCCTCCACGGAGCCCTGTGGCCT
GCGTGGCTGCGTCATACACGTGAACTTGGAAGTTGAAAATGTATGTAAAAAGCTGGATAG
GATTGTGTGTGATCCTAGCGTGGTGCCCACCTTCGAGCTTACGCTTGTGTTTAAGCAGGA
GACCTGCTCGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|31541839|ref|NP_084419.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|31541839|ref|NP_084419.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               443-561, + strand, RNAz p=0.5369

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               443-561, + strand, RNAz p=0.5369

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               443-792, gnl|bosTau2|chr6 (9032898-9032549)
               

               
               443-792, gnl|canFam2|chr32 (24987386-24987825)
               

               
               443-792, gnl|dasNov1|scaffold_7992 (85951-85513)
               

               
               443-792, gnl|echTel1|scaffold_179211 (4764-5202)
               

               
               443-792, gnl|fr1|chrUn (215877691-215878118)
               

               
               443-792, gnl|hg17|chr4 (101466079-101466517)
               

               
               443-792, gnl|Hg17|chr4 (101466503-101466154)
               

               
               443-792, gnl|loxAfr1|scaffold_5703 (10427-10865)
               

               
               443-792, gnl|mm7|chr3 (137434630-137434192)
               

               
               443-792, gnl|Mm7|chr3 (137434204-137434553)
               

               
               443-792, gnl|monDom2|scaffold_37 (12412894-12412456)
               

               
               443-792, gnl|oryCun1|scaffold_179011 (123696-124134)
               

               
               443-792, gnl|panTro1|chr3 (117844018-117844456)
               

               
               443-792, gnl|rheMac2|chr5 (93140891-93141329)
               

               
               443-792, gnl|rn3|chr2 (235120026-235119588)
               

               
               443-792, gnl|xenTro1|scaffold_326 (1119331-1118896)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               443-792, gnl|bosTau2|chr6 (9032898-9032549)
               

               
               443-792, gnl|canFam2|chr32 (24987386-24987825)
               

               
               443-792, gnl|dasNov1|scaffold_7992 (85951-85513)
               

               
               443-792, gnl|echTel1|scaffold_179211 (4764-5202)
               

               
               443-792, gnl|fr1|chrUn (215877691-215878118)
               

               
               443-792, gnl|hg17|chr4 (101466079-101466517)
               

               
               443-792, gnl|Hg17|chr4 (101466503-101466154)
               

               
               443-792, gnl|loxAfr1|scaffold_5703 (10427-10865)
               

               
               443-792, gnl|mm7|chr3 (137434630-137434192)
               

               
               443-792, gnl|Mm7|chr3 (137434204-137434553)
               

               
               443-792, gnl|monDom2|scaffold_37 (12412894-12412456)
               

               
               443-792, gnl|oryCun1|scaffold_179011 (123696-124134)
               

               
               443-792, gnl|panTro1|chr3 (117844018-117844456)
               

               
               443-792, gnl|rheMac2|chr5 (93140891-93141329)
               

               
               443-792, gnl|rn3|chr2 (235120026-235119588)
               

               
               443-792, gnl|xenTro1|scaffold_326 (1119331-1118896)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cbl (0.229595)
               

               
               nep (0.183925)
               

               
               ste (0.135208)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)
               

               
               nep (0.183925)
               

               
               ste (0.135208)
               

               
               eje (0.0988338)

	443-792, gnl\|bosTau2\|chr6 (9032898-9032549)
	443-792, gnl\|canFam2\|chr32 (24987386-24987825)
	443-792, gnl\|dasNov1\|scaffold_7992 (85951-85513)
	443-792, gnl\|echTel1\|scaffold_179211 (4764-5202)
	443-792, gnl\|fr1\|chrUn (215877691-215878118)
	443-792, gnl\|hg17\|chr4 (101466079-101466517)
	443-792, gnl\|Hg17\|chr4 (101466503-101466154)
	443-792, gnl\|loxAfr1\|scaffold_5703 (10427-10865)
	443-792, gnl\|mm7\|chr3 (137434630-137434192)
	443-792, gnl\|Mm7\|chr3 (137434204-137434553)
	443-792, gnl\|monDom2\|scaffold_37 (12412894-12412456)
	443-792, gnl\|oryCun1\|scaffold_179011 (123696-124134)
	443-792, gnl\|panTro1\|chr3 (117844018-117844456)
	443-792, gnl\|rheMac2\|chr5 (93140891-93141329)
	443-792, gnl\|rn3\|chr2 (235120026-235119588)
	443-792, gnl\|xenTro1\|scaffold_326 (1119331-1118896)