Non-Coding RNA Search

Ss1.1-rcbl0_011134.5

Sequence:


               
               CGACGGCATCAGGAAGATACCCCAAACCAAAGATACCCTGAGAACAAAGATAAAAGAAGC
AAAGAAGACAAAGAAATTCAAAACAAGTACACAGAGAGGGAGGTGTCAACAAAAGACGAT
AAACCCATGCAGTGCACACCTCAGAAAGCCAAGCCAGTGAGGGCAGCTGTCGACCCTGGG
AGAGAGAAAATTCTCAGGCTACCGGTGGAAAAATGGAAGAGACAGGATGACAAAGACTTG
AGAGAAAAACGTTGTTTTATTTGTGGACGAGAAGGGCACATTAAAAAGGAATGCCCACAA
TTTAAAGGCTCTTCAGGTCTGTCTAGATCAGACTGTGTGTTTGGATCCCCCTCTTCACCT
AGGCCTTTGAGACCAGCAGGCACATTCGTTCAGGCAGTGCTTTTACATGAAGACCAAAAG
AAACAAAAAACATCTATATTTTTGAGTCCCCAGTCAGGTAGCCTTTCCAGTAAATATATG
ACTCAGGGAAAAGCCTCAGCGAAGAGGACCCAGCAGGAATCATGAGGGAAGGAAAATGCC
GCACTCTAAATGCCACTCAGGCATTCCTATTCACTTTGAAAATAGGGTTCATTTCACAGG
ACACAGCAGCATAGATCAGGCTTCAACTTAACATTTAAGGGAAATGTCAGATTTTTTTTA
ACTTAATGAAATTGTTAATGAGGAAAAAAAATTTTAATAGAGTCTTACCTATTACAAATC
CCATAGGTTTAAGGATTTTAATAGAAAGCCATGATGTATGTATTTAAGACAGGTTTAAAA
AAAAAAAATGTAACTATGGGCCAGTATTCAGTGAATACAATTTCATGGTTTTTAAATCTC
TCAAAGCACGCTAAAAATAGTGTGCTGATAAACTCCAAGTAAATTGATCTTTTTTTTCCT
TAAAAATTCTTTTTTTGTTTGTTTGTTTTGAAAAGGGGAAATTATATTTATTGTCGTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACGGCATCAGGAAGATACCCCAAACCAAAGATACCCTGAGAACAAAGATAAAAGAAGC
AAAGAAGACAAAGAAATTCAAAACAAGTACACAGAGAGGGAGGTGTCAACAAAAGACGAT
AAACCCATGCAGTGCACACCTCAGAAAGCCAAGCCAGTGAGGGCAGCTGTCGACCCTGGG
AGAGAGAAAATTCTCAGGCTACCGGTGGAAAAATGGAAGAGACAGGATGACAAAGACTTG
AGAGAAAAACGTTGTTTTATTTGTGGACGAGAAGGGCACATTAAAAAGGAATGCCCACAA
TTTAAAGGCTCTTCAGGTCTGTCTAGATCAGACTGTGTGTTTGGATCCCCCTCTTCACCT
AGGCCTTTGAGACCAGCAGGCACATTCGTTCAGGCAGTGCTTTTACATGAAGACCAAAAG
AAACAAAAAACATCTATATTTTTGAGTCCCCAGTCAGGTAGCCTTTCCAGTAAATATATG
ACTCAGGGAAAAGCCTCAGCGAAGAGGACCCAGCAGGAATCATGAGGGAAGGAAAATGCC
GCACTCTAAATGCCACTCAGGCATTCCTATTCACTTTGAAAATAGGGTTCATTTCACAGG
ACACAGCAGCATAGATCAGGCTTCAACTTAACATTTAAGGGAAATGTCAGATTTTTTTTA
ACTTAATGAAATTGTTAATGAGGAAAAAAAATTTTAATAGAGTCTTACCTATTACAAATC
CCATAGGTTTAAGGATTTTAATAGAAAGCCATGATGTATGTATTTAAGACAGGTTTAAAA
AAAAAAAATGTAACTATGGGCCAGTATTCAGTGAATACAATTTCATGGTTTTTAAATCTC
TCAAAGCACGCTAAAAATAGTGTGCTGATAAACTCCAAGTAAATTGATCTTTTTTTTCCT
TAAAAATTCTTTTTTTGTTTGTTTGTTTTGAAAAGGGGAAATTATATTTATTGTCGTTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55631861|ref|XP_520105.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55631861|ref|XP_520105.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               770-957, + strand, RNAz p=0.998268

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               770-957, + strand, RNAz p=0.998268

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BX641077, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BX641077, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-321, gnl|bosTau2|chr24 (26451090-26450770)
               

               
               1-321, gnl|canFam2|chr1 (76506077-76505816)
               

               
               1-321, gnl|dasNov1|scaffold_26752 (3992-3731)
               

               
               1-321, gnl|echTel1|scaffold_60149 (271-7)
               

               
               1-321, gnl|galGal2|chrZ_random (13420377-13420637)
               

               
               1-321, gnl|hg17|chr9 (86145717-86145978)
               

               
               1-321, gnl|Hg17|chr9 (86146060-86145740)
               

               
               1-321, gnl|loxAfr1|scaffold_189508 (717-981)
               

               
               1-321, gnl|mm7|chr13 (58890413-58890676)
               

               
               1-321, gnl|Mm7|chr13 (58890758-58890438)
               

               
               1-321, gnl|monDom2|scaffold_83 (4335923-4335666)
               

               
               1-321, gnl|oryCun1|scaffold_198542 (46651-46912)
               

               
               1-321, gnl|panTro1|chr11 (70200079-70200340)
               

               
               1-321, gnl|rheMac2|chr15 (94868906-94869167)
               

               
               1-321, gnl|rn3|chr17 (10795920-10795657)
               

               
               1-321, gnl|xenTro1|scaffold_528 (127109-127376)
               


               
               456-957, gnl|bosTau2|chr24 (26437558-26437075)
               

               
               456-957, gnl|Hg17|chr9 (86133215-86132725)
               

               
               456-957, gnl|Mm7|chr13 (58881286-58880826)
               


               
               615-866, gnl|bosTau2|chr15 (47259289-47259041)
               

               
               615-866, gnl|Hg17|chr11 (44139310-44139710)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-321, gnl|bosTau2|chr24 (26451090-26450770)
               

               
               1-321, gnl|canFam2|chr1 (76506077-76505816)
               

               
               1-321, gnl|dasNov1|scaffold_26752 (3992-3731)
               

               
               1-321, gnl|echTel1|scaffold_60149 (271-7)
               

               
               1-321, gnl|galGal2|chrZ_random (13420377-13420637)
               

               
               1-321, gnl|hg17|chr9 (86145717-86145978)
               

               
               1-321, gnl|Hg17|chr9 (86146060-86145740)
               

               
               1-321, gnl|loxAfr1|scaffold_189508 (717-981)
               

               
               1-321, gnl|mm7|chr13 (58890413-58890676)
               

               
               1-321, gnl|Mm7|chr13 (58890758-58890438)
               

               
               1-321, gnl|monDom2|scaffold_83 (4335923-4335666)
               

               
               1-321, gnl|oryCun1|scaffold_198542 (46651-46912)
               

               
               1-321, gnl|panTro1|chr11 (70200079-70200340)
               

               
               1-321, gnl|rheMac2|chr15 (94868906-94869167)
               

               
               1-321, gnl|rn3|chr17 (10795920-10795657)
               

               
               1-321, gnl|xenTro1|scaffold_528 (127109-127376)
               


               
               456-957, gnl|bosTau2|chr24 (26437558-26437075)
               

               
               456-957, gnl|Hg17|chr9 (86133215-86132725)
               

               
               456-957, gnl|Mm7|chr13 (58881286-58880826)
               


               
               615-866, gnl|bosTau2|chr15 (47259289-47259041)
               

               
               615-866, gnl|Hg17|chr11 (44139310-44139710)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cbl (1.14797)
               

               
               lun (0.451467)
               

               
               pan (0.23596)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               fat (0.147427)
               

               
               jej (0.0989218)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (1.14797)
               

               
               lun (0.451467)
               

               
               pan (0.23596)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               fat (0.147427)
               

               
               jej (0.0989218)

	1-321, gnl\|bosTau2\|chr24 (26451090-26450770)
	1-321, gnl\|canFam2\|chr1 (76506077-76505816)
	1-321, gnl\|dasNov1\|scaffold_26752 (3992-3731)
	1-321, gnl\|echTel1\|scaffold_60149 (271-7)
	1-321, gnl\|galGal2\|chrZ_random (13420377-13420637)
	1-321, gnl\|hg17\|chr9 (86145717-86145978)
	1-321, gnl\|Hg17\|chr9 (86146060-86145740)
	1-321, gnl\|loxAfr1\|scaffold_189508 (717-981)
	1-321, gnl\|mm7\|chr13 (58890413-58890676)
	1-321, gnl\|Mm7\|chr13 (58890758-58890438)
	1-321, gnl\|monDom2\|scaffold_83 (4335923-4335666)
	1-321, gnl\|oryCun1\|scaffold_198542 (46651-46912)
	1-321, gnl\|panTro1\|chr11 (70200079-70200340)
	1-321, gnl\|rheMac2\|chr15 (94868906-94869167)
	1-321, gnl\|rn3\|chr17 (10795920-10795657)
	1-321, gnl\|xenTro1\|scaffold_528 (127109-127376)

	456-957, gnl\|bosTau2\|chr24 (26437558-26437075)
	456-957, gnl\|Hg17\|chr9 (86133215-86132725)
	456-957, gnl\|Mm7\|chr13 (58881286-58880826)

	615-866, gnl\|bosTau2\|chr15 (47259289-47259041)
	615-866, gnl\|Hg17\|chr11 (44139310-44139710)

	cbl (1.14797)
	lun (0.451467)
	pan (0.23596)
	hea (0.204499)
	cmu (0.186393)
	fat (0.147427)
	jej (0.0989218)