Non-Coding RNA Search

Ss1.1-rcbl0_011236.5

Sequence:


               
               CAGCTGTGAAGTGACTGGCACCATTAAAGCAGTTGACCGATTATCAGCTCCTGAGTTAGA
CATCGATGCCAACTTCAAGCAGACTCACATTGTCAGAGCTGGGGCCAGTATTCGCCTCTT
CATTGCCTACCAGGGTAGACCAGCTCCCACAGCTGTGTGGAGCAAACCCGACTCTAACCT
CAGCATACGGGCTGATATCCACACTACAGATTCCTTCAGCACCCTCACTGTGGAAAACTG
CAACAGAAATGATGCAGGGAAATACACTCTGACTGTGGAAAACAACAGTGGCAGTAAGTC
AATCACATTCACCGTAAAGGTGCTCGACTCTCCGGGCCCGCCTGGCCCGATCACCTTCAA
GGATGTGACCCGGGGATCTGTTACATTGATGTGGGATGCCCCTCTCCTTGATGGTGGTGC
CCGAATCCATCACTACGTGGTAGAGAAGCGAGAAGCCAGTCGCCGTAGCTGGCAGGTGGT
CAGTGAAAAATGCATTCGTCAGATCCTCAAGGTCAATGACCTGGTAGAAGGCGTTCCATA
CTATTTCCGTGTCTCTGCAGCAAATGAGTATGGTGTTGGTGAACCCTATGAAATGCCAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCTGTGAAGTGACTGGCACCATTAAAGCAGTTGACCGATTATCAGCTCCTGAGTTAGA
CATCGATGCCAACTTCAAGCAGACTCACATTGTCAGAGCTGGGGCCAGTATTCGCCTCTT
CATTGCCTACCAGGGTAGACCAGCTCCCACAGCTGTGTGGAGCAAACCCGACTCTAACCT
CAGCATACGGGCTGATATCCACACTACAGATTCCTTCAGCACCCTCACTGTGGAAAACTG
CAACAGAAATGATGCAGGGAAATACACTCTGACTGTGGAAAACAACAGTGGCAGTAAGTC
AATCACATTCACCGTAAAGGTGCTCGACTCTCCGGGCCCGCCTGGCCCGATCACCTTCAA
GGATGTGACCCGGGGATCTGTTACATTGATGTGGGATGCCCCTCTCCTTGATGGTGGTGC
CCGAATCCATCACTACGTGGTAGAGAAGCGAGAAGCCAGTCGCCGTAGCTGGCAGGTGGT
CAGTGAAAAATGCATTCGTCAGATCCTCAAGGTCAATGACCTGGTAGAAGGCGTTCCATA
CTATTTCCGTGTCTCTGCAGCAAATGAGTATGGTGTTGGTGAACCCTATGAAATGCCAGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-239, - strand, RNAz p=0.733687
               

               
               440-559, + strand, RNAz p=0.696959

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-239, - strand, RNAz p=0.733687
               

               
               440-559, + strand, RNAz p=0.696959

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-600, gnl|bosTau2|chr2 (7855762-7856361)
               

               
               1-600, gnl|Hg17|chr2 (179239142-179238543)
               

               
               1-600, gnl|Mm7|chr2 (76569995-76569396)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-600, gnl|bosTau2|chr2 (7855762-7856361)
               

               
               1-600, gnl|Hg17|chr2 (179239142-179238543)
               

               
               1-600, gnl|Mm7|chr2 (76569995-76569396)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               che (0.136314)
               

               
               cbl (0.114797)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)
               

               
               cbl (0.114797)

	80-239, - strand, RNAz p=0.733687
	440-559, + strand, RNAz p=0.696959

	1-600, gnl\|bosTau2\|chr2 (7855762-7856361)
	1-600, gnl\|Hg17\|chr2 (179239142-179238543)
	1-600, gnl\|Mm7\|chr2 (76569995-76569396)