Non-Coding RNA Search

Ss1.1-rcbl0_011747.5

Sequence:


               
               CTTTTCCAGGAGGGCGACCCCGAAGACACGGATGACCAAACAAACCACCCAAGCAACGAT
AAAGACTGTTCATCTGCACAAAATTCTTCAGCCGTACAAGGTCCCGAGAGGAAAGTTCTG
CTCTGATTTACTGATAATCTGGAGGGTCGTATCAGTATGCGCTAACCAGCAAGATTCAGG
TCTGCCACGGTAAATTAAAGTCAGATTCTTAAAGGTTTCTTCCACAAGGAATTCTAAAGA
AAGGATTTGTAGCATCTCTCCTTTTTCTACTTTCTGTTATTTCCTATCTTCTATTATTCC
AAAAAGGCCAGTAGAATTTAAATTGGTCAGCTGTTTATATAAAGTACTCTGAAAGATTGT
ATCTACAGAGTTTTCTGCCAAGATAACACACCCACACCCACTCCCCAAAAAAGGAAAGAT
AAAGATGAAGAATTCAGAATTTGATCATTGCTTTCTTCAAGAAGTATATAACTCAGTAGG
TGCCTCTGCACCAAGCGTTTTTTGGAATATCTGAATATTTGAAACTCATTGTTGGGCAGT
TTTTGCCTGTTGCCTTCTTAGCTCAGAGTAGAAGGAGAATTTTTTGACTGCCACAAACAA
GAACACAGGTATCTTTGATTTTCAGACATATTCTGTTTCTTCCTTAAAATCCTCCTTAAA
ACCTGTAACACTAGATATTGAATATCCTTACTTGAGTCACTAAGATTTAAACAAATGATA
ATTCTTTTACTATCTACAGAGCATTGAATACTTAACAATTTGCAGTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTCCAGGAGGGCGACCCCGAAGACACGGATGACCAAACAAACCACCCAAGCAACGAT
AAAGACTGTTCATCTGCACAAAATTCTTCAGCCGTACAAGGTCCCGAGAGGAAAGTTCTG
CTCTGATTTACTGATAATCTGGAGGGTCGTATCAGTATGCGCTAACCAGCAAGATTCAGG
TCTGCCACGGTAAATTAAAGTCAGATTCTTAAAGGTTTCTTCCACAAGGAATTCTAAAGA
AAGGATTTGTAGCATCTCTCCTTTTTCTACTTTCTGTTATTTCCTATCTTCTATTATTCC
AAAAAGGCCAGTAGAATTTAAATTGGTCAGCTGTTTATATAAAGTACTCTGAAAGATTGT
ATCTACAGAGTTTTCTGCCAAGATAACACACCCACACCCACTCCCCAAAAAAGGAAAGAT
AAAGATGAAGAATTCAGAATTTGATCATTGCTTTCTTCAAGAAGTATATAACTCAGTAGG
TGCCTCTGCACCAAGCGTTTTTTGGAATATCTGAATATTTGAAACTCATTGTTGGGCAGT
TTTTGCCTGTTGCCTTCTTAGCTCAGAGTAGAAGGAGAATTTTTTGACTGCCACAAACAA
GAACACAGGTATCTTTGATTTTCAGACATATTCTGTTTCTTCCTTAAAATCCTCCTTAAA
ACCTGTAACACTAGATATTGAATATCCTTACTTGAGTCACTAAGATTTAAACAAATGATA
ATTCTTTTACTATCTACAGAGCATTGAATACTTAACAATTTGCAGTAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               429-533, + strand, RNAz p=0.988175

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               429-533, + strand, RNAz p=0.988175

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_000081, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_000081, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-764, gnl|bosTau2|chr28 (3782042-3781291)
               

               
               4-764, gnl|Hg17|chr1 (232152215-232151451)
               

               
               4-764, gnl|Mm7|chr13 (13145735-13146394)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-764, gnl|bosTau2|chr28 (3782042-3781291)
               

               
               4-764, gnl|Hg17|chr1 (232152215-232151451)
               

               
               4-764, gnl|Mm7|chr13 (13145735-13146394)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cbl (1.03318)
               

               
               spl (0.143184)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (1.03318)
               

               
               spl (0.143184)
               

               
               jca (0.11396)

	4-764, gnl\|bosTau2\|chr28 (3782042-3781291)
	4-764, gnl\|Hg17\|chr1 (232152215-232151451)
	4-764, gnl\|Mm7\|chr13 (13145735-13146394)