Non-Coding RNA Search

Ss1.1-rcbl0_011825.5

Sequence:


               
               GTTTAACTTACTTTACCATATCTGCAACTGTTTTCAACACAATGTTTTATTGTACACAGA
CTTCATTTATTCTCAGTAGCAATTACTACAATAAGCCTTTCAACATTATCAAAAACGAGT
CCTATTTCAACCAGAAAGTTGACATTTTATTTCTATAATCTTGGTGAAATTGTTGTGGGT
TGACACCAAATAGATATTTCTGTTTCCATATCTAAATTTGCTGCTACTTTTTTGTATGTT
TATCCACTGCAGTCTACCATTGACTTCTAAAGTTGCGTGGTCATTGTTACCTTTATTGTA
GGAATCCAAGCTAAATGGGCAGCCAAAAGTGGAATCTACTAGGGTGCAATCCATCAACAT
TGACTAGATATGGTTTGGTGAATAAATAAGTAAACCATTTTATTTAATTTACAAAGTGAA
AGATATTAGCAATATTGCAATTTAAAGACTGCAATTTCAGGAGGAAGTTCTAATGTTTAA
CTTCCCAAAACATTTTAAAATTTCCAATATAAGAATGAAAATGTTTGCTCATTTTCAGTA
TAAGAATGAAATGTTGCTTGTTATGCTCATAGAAGTTTCAGTTAAACACTGTAGAATTTT
CCTAGCTATTGTGTAAATGATACAGAAAATATTTTTCTATGGACAAAAGATCGTTCTTTT
GCTTCATTGTTTAAAAAGGAAAGAATGATATTTGTATGTCTTTCATGCTGTAAAGAAATG
AATGTATCTTCCAAATGTTAGAATTAAGACTTAATTCTAAAGATACTGGTTTTTTTTTAA
AAAAAAAAAAAAAAAGTTTGCAAGGAATTGAAAAGGAAAGGAAGGATGTTTTCCACTTCA
TTATAAAAACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTAACTTACTTTACCATATCTGCAACTGTTTTCAACACAATGTTTTATTGTACACAGA
CTTCATTTATTCTCAGTAGCAATTACTACAATAAGCCTTTCAACATTATCAAAAACGAGT
CCTATTTCAACCAGAAAGTTGACATTTTATTTCTATAATCTTGGTGAAATTGTTGTGGGT
TGACACCAAATAGATATTTCTGTTTCCATATCTAAATTTGCTGCTACTTTTTTGTATGTT
TATCCACTGCAGTCTACCATTGACTTCTAAAGTTGCGTGGTCATTGTTACCTTTATTGTA
GGAATCCAAGCTAAATGGGCAGCCAAAAGTGGAATCTACTAGGGTGCAATCCATCAACAT
TGACTAGATATGGTTTGGTGAATAAATAAGTAAACCATTTTATTTAATTTACAAAGTGAA
AGATATTAGCAATATTGCAATTTAAAGACTGCAATTTCAGGAGGAAGTTCTAATGTTTAA
CTTCCCAAAACATTTTAAAATTTCCAATATAAGAATGAAAATGTTTGCTCATTTTCAGTA
TAAGAATGAAATGTTGCTTGTTATGCTCATAGAAGTTTCAGTTAAACACTGTAGAATTTT
CCTAGCTATTGTGTAAATGATACAGAAAATATTTTTCTATGGACAAAAGATCGTTCTTTT
GCTTCATTGTTTAAAAAGGAAAGAATGATATTTGTATGTCTTTCATGCTGTAAAGAAATG
AATGTATCTTCCAAATGTTAGAATTAAGACTTAATTCTAAAGATACTGGTTTTTTTTTAA
AAAAAAAAAAAAAAAGTTTGCAAGGAATTGAAAAGGAAAGGAAGGATGTTTTCCACTTCA
TTATAAAAACTG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               3-476, gnl|bosTau2|chr2 (43802960-43802485)
               

               
               3-476, gnl|Hg17|chr2 (120455476-120455911)
               

               
               3-476, gnl|Mm7|chr1 (119516049-119515631)
               


               
               536-852, gnl|bosTau2|chr2 (43802473-43802139)
               

               
               536-852, gnl|Hg17|chr2 (120455940-120456263)
               

               
               536-852, gnl|Mm7|chr1 (119515602-119515306)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-476, gnl|bosTau2|chr2 (43802960-43802485)
               

               
               3-476, gnl|Hg17|chr2 (120455476-120455911)
               

               
               3-476, gnl|Mm7|chr1 (119516049-119515631)
               


               
               536-852, gnl|bosTau2|chr2 (43802473-43802139)
               

               
               536-852, gnl|Hg17|chr2 (120455940-120456263)
               

               
               536-852, gnl|Mm7|chr1 (119515602-119515306)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               mga (0.160205)
               

               
               ret (0.128733)
               

               
               cbl (0.114797)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.160205)
               

               
               ret (0.128733)
               

               
               cbl (0.114797)

	3-476, gnl\|bosTau2\|chr2 (43802960-43802485)
	3-476, gnl\|Hg17\|chr2 (120455476-120455911)
	3-476, gnl\|Mm7\|chr1 (119516049-119515631)

	536-852, gnl\|bosTau2\|chr2 (43802473-43802139)
	536-852, gnl\|Hg17\|chr2 (120455940-120456263)
	536-852, gnl\|Mm7\|chr1 (119515602-119515306)