Non-Coding RNA Search

Ss1.1-rcbl0_011878.5.5

Sequence:


               
               TATTCCTTTCAGAAATAATCCTGAGCCTGTGGAATAATAGTAGGCAATGGATTTATTGGG
AAGCCATCAAGCCAGTTTTCCTGAAGCCTGTGTTTTAAGTGAGTTTATAGTATTAATAGA
TTTCACATACCATAGGAGTTAGGTAATAAACCAATAAGGATTGTTTTCTCTTCTAAAAAT
GTGCATACTGCTGCATCATCTGCCAACTTTTTAGATAACACAAAGTGCAAATACATATGC
ATAGATACATGATATTCAGACTAGGAAAAACAATGGACCTAAGTTTAGTTTTTAAAAGTT
AACATGCACAGTGCAAGATTTCTCTATCGTCGAGGGTTTTTGGGGGGCCCAGGGTGGGGG
GAGCCACATCCATTGGCATGTGGAAGTTCCCAAGCCAAGGATCCAATCCACTGTGCCACA
GGAGAACTCCTTTATGTTGTTTTTTGTTTTTTAAGAAAGCCTTGGTCTTTCTAAGAATCC
ATTTGAAGACAGTGCTCTGGAAATTTTTGTCATTTATTTATTTACAGAAATTTGATGTAA
GTATGTTCCTTTTTCAAAGAAACTGTATCCTAAAAAAAAATGGTCTTATACATACTACTT
GGTCTATATTTAAAGGAAAAAACAAGCAGTATTTAAAAGCCCAATTTCTGTTACTGTCTT
ATTTCAAATATAAGTAACTGGAAAAAAAGTTTTAACCTTTCATGTCTCTATTCTGTTTTT
TATCCAGTATTTTCCTTCCATGTGAATTCAATATATACTTATAAAAAATTCTAAAATGGC
ACCTTCCTTTTTTGGAAATGAATCTTTTATTCTTTAAAGAAAACAACATAAAAAAGCATT
TACAGAGCTGCTCTTGAAAATAATTAATGTTTGCATATATATGGAAATCTTACATTTTTC
CCAAACAATATTTAATAAACAGTTATTTTAATGTTTGTGTAAATATTTCATGTATAATTG
AGATCTTAGTTGTAAAACCTTAATTTTGCTTAAGTCTTTGAGCTAGAATAAATATTTCAC
TCCTACGAAATTGGGATCAGCCAGTTAAGTTCACCTAATGTAGTTTTGGAATGCTATAAC
ATGCAACATGTATATAGTGTATATTGGCATTTATCTGTGAAATTTTATACATCCATCCAG
AATTTCTTCTCCCTTTTAAATTAAAATAATTTTATTTTTGCCATACTGTAATGAATTTTG
TGTTGCAGGTTGATAGTATAAAATCTGTGTACTGAAATACTTTTGGTGTTAATAAGAAAT
ACAGGATTGTTATTTTTCTTTTTCATGATCTTATGGATTATATTTATTTTAAGACCTGTT
TATACTTAAATATTTTCTGCCAAAGGAATTGTCTAACATCAGATTTCTACATTAGGTTCA
TACATACTATTTTCTATGAAAAATAAAAATAACTTCTGCTTTTTCATATGAAATCTTGGT
GCATTAGAAAGAATTCCTGAAAATTTATAATAAAATTAATTTTCACTAATGTAGGAAAAA
TTTCCCCTGGGTGTTAAACTATATGAAGTGGGATCTGTTCTTATAGTTTGGAAAATGTAT
GGTCTACCAACATTGTCTTGTAATTTGGTGATTTGACTATAAAATTACATGAACATTAAA
TAATTATAATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTCCTTTCAGAAATAATCCTGAGCCTGTGGAATAATAGTAGGCAATGGATTTATTGGG
AAGCCATCAAGCCAGTTTTCCTGAAGCCTGTGTTTTAAGTGAGTTTATAGTATTAATAGA
TTTCACATACCATAGGAGTTAGGTAATAAACCAATAAGGATTGTTTTCTCTTCTAAAAAT
GTGCATACTGCTGCATCATCTGCCAACTTTTTAGATAACACAAAGTGCAAATACATATGC
ATAGATACATGATATTCAGACTAGGAAAAACAATGGACCTAAGTTTAGTTTTTAAAAGTT
AACATGCACAGTGCAAGATTTCTCTATCGTCGAGGGTTTTTGGGGGGCCCAGGGTGGGGG
GAGCCACATCCATTGGCATGTGGAAGTTCCCAAGCCAAGGATCCAATCCACTGTGCCACA
GGAGAACTCCTTTATGTTGTTTTTTGTTTTTTAAGAAAGCCTTGGTCTTTCTAAGAATCC
ATTTGAAGACAGTGCTCTGGAAATTTTTGTCATTTATTTATTTACAGAAATTTGATGTAA
GTATGTTCCTTTTTCAAAGAAACTGTATCCTAAAAAAAAATGGTCTTATACATACTACTT
GGTCTATATTTAAAGGAAAAAACAAGCAGTATTTAAAAGCCCAATTTCTGTTACTGTCTT
ATTTCAAATATAAGTAACTGGAAAAAAAGTTTTAACCTTTCATGTCTCTATTCTGTTTTT
TATCCAGTATTTTCCTTCCATGTGAATTCAATATATACTTATAAAAAATTCTAAAATGGC
ACCTTCCTTTTTTGGAAATGAATCTTTTATTCTTTAAAGAAAACAACATAAAAAAGCATT
TACAGAGCTGCTCTTGAAAATAATTAATGTTTGCATATATATGGAAATCTTACATTTTTC
CCAAACAATATTTAATAAACAGTTATTTTAATGTTTGTGTAAATATTTCATGTATAATTG
AGATCTTAGTTGTAAAACCTTAATTTTGCTTAAGTCTTTGAGCTAGAATAAATATTTCAC
TCCTACGAAATTGGGATCAGCCAGTTAAGTTCACCTAATGTAGTTTTGGAATGCTATAAC
ATGCAACATGTATATAGTGTATATTGGCATTTATCTGTGAAATTTTATACATCCATCCAG
AATTTCTTCTCCCTTTTAAATTAAAATAATTTTATTTTTGCCATACTGTAATGAATTTTG
TGTTGCAGGTTGATAGTATAAAATCTGTGTACTGAAATACTTTTGGTGTTAATAAGAAAT
ACAGGATTGTTATTTTTCTTTTTCATGATCTTATGGATTATATTTATTTTAAGACCTGTT
TATACTTAAATATTTTCTGCCAAAGGAATTGTCTAACATCAGATTTCTACATTAGGTTCA
TACATACTATTTTCTATGAAAAATAAAAATAACTTCTGCTTTTTCATATGAAATCTTGGT
GCATTAGAAAGAATTCCTGAAAATTTATAATAAAATTAATTTTCACTAATGTAGGAAAAA
TTTCCCCTGGGTGTTAAACTATATGAAGTGGGATCTGTTCTTATAGTTTGGAAAATGTAT
GGTCTACCAACATTGTCTTGTAATTTGGTGATTTGACTATAAAATTACATGAACATTAAA
TAATTATAATAT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               2-308, gnl|bosTau2|chr2 (29175121-29175432)
               

               
               2-308, gnl|Hg17|chr2 (152801459-152801139)
               

               
               2-308, gnl|Mm7|chr2 (52701047-52700745)
               


               
               437-1631, gnl|bosTau2|chr2 (29175546-29176747)
               

               
               437-1631, gnl|Hg17|chr2 (152801124-152799933)
               

               
               437-1631, gnl|Mm7|chr2 (52700725-52699624)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-308, gnl|bosTau2|chr2 (29175121-29175432)
               

               
               2-308, gnl|Hg17|chr2 (152801459-152801139)
               

               
               2-308, gnl|Mm7|chr2 (52701047-52700745)
               


               
               437-1631, gnl|bosTau2|chr2 (29175546-29176747)
               

               
               437-1631, gnl|Hg17|chr2 (152801124-152799933)
               

               
               437-1631, gnl|Mm7|chr2 (52700725-52699624)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               cbl (1.72196)
               

               
               sme (0.305437)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (1.72196)
               

               
               sme (0.305437)
               

               
               fcc (0.197785)
               

               
               mgm (0.180343)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	2-308, gnl\|bosTau2\|chr2 (29175121-29175432)
	2-308, gnl\|Hg17\|chr2 (152801459-152801139)
	2-308, gnl\|Mm7\|chr2 (52701047-52700745)

	437-1631, gnl\|bosTau2\|chr2 (29175546-29176747)
	437-1631, gnl\|Hg17\|chr2 (152801124-152799933)
	437-1631, gnl\|Mm7\|chr2 (52700725-52699624)

	cbl (1.72196)
	sme (0.305437)
	fcc (0.197785)
	mgm (0.180343)
	mga (0.160205)
	fco (0.157208)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	ret (0.128733)
	ebs (0.118301)
	cty (0.10408)
	nbm (0.0993246)
	eje (0.0988338)