Non-Coding RNA Search

Ss1.1-rcbl0_012158.5

Sequence:


               
               TTGTGTGTATGCATATTTTATCCAGCCTTAAGTTATAAAACTCATCTGTCCCACTGCATT
CCCTATGTATTTTCAGGACATAGCTTGTGGGTGTGTGTGTTCAATGTGTGTGTCTGTGTG
TATCTTTCTGTCATTACTGTTCCTTCTCCCGAATTTGCATTCGTTGATAAATCAGTTGCC
TGCTTCTTTCAAAGTGCTTTGAAGGTTTTGAACTCACATATGAGCATTTTTATTGACTAT
CCCAATTGCATGTTCTCCATCACGTATTCTCTTTATTTGCTAGATACCCCCTGAGAATAT
GTTTCAGAGATTGGAATAAAGCCGTCTGGGTAAGGAGTAGGTTTAGCCGACCTGTGAATA
ATACACTTTAGTCTAGTTCTTTACTCTAAATTTGGATTGCCAGTATTATGTATTTAAACC
AAGTCTGTGAACACCTGCTTTTTTTGGCCACAGAGTAACAAGTTTTCATGTAGGATCTTC
ATACCAAAGTAGGAAGTAAAAATAGCTTAGAAAACCCTGTTGGGTGTCCTGTGCAGCTAA
CAGAGGTAAGGCTAAATCACCTCAAAAAAGAAAGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTGTGTATGCATATTTTATCCAGCCTTAAGTTATAAAACTCATCTGTCCCACTGCATT
CCCTATGTATTTTCAGGACATAGCTTGTGGGTGTGTGTGTTCAATGTGTGTGTCTGTGTG
TATCTTTCTGTCATTACTGTTCCTTCTCCCGAATTTGCATTCGTTGATAAATCAGTTGCC
TGCTTCTTTCAAAGTGCTTTGAAGGTTTTGAACTCACATATGAGCATTTTTATTGACTAT
CCCAATTGCATGTTCTCCATCACGTATTCTCTTTATTTGCTAGATACCCCCTGAGAATAT
GTTTCAGAGATTGGAATAAAGCCGTCTGGGTAAGGAGTAGGTTTAGCCGACCTGTGAATA
ATACACTTTAGTCTAGTTCTTTACTCTAAATTTGGATTGCCAGTATTATGTATTTAAACC
AAGTCTGTGAACACCTGCTTTTTTTGGCCACAGAGTAACAAGTTTTCATGTAGGATCTTC
ATACCAAAGTAGGAAGTAAAAATAGCTTAGAAAACCCTGTTGGGTGTCCTGTGCAGCTAA
CAGAGGTAAGGCTAAATCACCTCAAAAAAGAAAGTC

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               4-346, gnl|bosTau2|chr10 (9924930-9924586)
               

               
               4-346, gnl|Hg17|chr15 (66267723-66268096)
               

               
               4-346, gnl|Mm7|chr9 (62909841-62909495)
               


               
               368-574, gnl|bosTau2|chr10 (9924589-9924384)
               

               
               368-574, gnl|Hg17|chr15 (66268093-66268298)
               

               
               368-574, gnl|Mm7|chr9 (62909507-62909298)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-346, gnl|bosTau2|chr10 (9924930-9924586)
               

               
               4-346, gnl|Hg17|chr15 (66267723-66268096)
               

               
               4-346, gnl|Mm7|chr9 (62909841-62909495)
               


               
               368-574, gnl|bosTau2|chr10 (9924589-9924384)
               

               
               368-574, gnl|Hg17|chr15 (66268093-66268298)
               

               
               368-574, gnl|Mm7|chr9 (62909507-62909298)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cbl (0.45919)
               

               
               liv (0.146284)
               

               
               spl (0.143184)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.45919)
               

               
               liv (0.146284)
               

               
               spl (0.143184)

	4-346, gnl\|bosTau2\|chr10 (9924930-9924586)
	4-346, gnl\|Hg17\|chr15 (66267723-66268096)
	4-346, gnl\|Mm7\|chr9 (62909841-62909495)

	368-574, gnl\|bosTau2\|chr10 (9924589-9924384)
	368-574, gnl\|Hg17\|chr15 (66268093-66268298)
	368-574, gnl\|Mm7\|chr9 (62909507-62909298)