Non-Coding RNA Search

Ss1.1-rcbl0_012188.5

Sequence:


               
               CCCGAAGGAGCTGTCTGGGAGGAATGCCGGTGCGCAACAAGATGGTTGGGTTTGGATTGT
TGTACTTTTTTTTTTGTTCGTTGCATTTTTAGGAACAAAAAAAAAAGCCCAACCCTTCAC
ACCGCTTCATCTGCATCTCTCAGGATCAGAAGCCCGGCCTCAGCGGCTTGGCGGGACGGA
GAAGCATGAGTGCTTAGCACCCCACAGCCAGGGGTGGGTGGGACGGGCACTCGTATTGTG
AGTAACGCAACGACTCTAGCCAAAGGCTGCGGCCAGAGTCCAAGCACAATAGATAACTAT
TATACCCCGCCTCATCCTTGCACCTATTCCTTTGCAGGCTTTAAGCTGAACACTAGTAAA
CCAATTCAAGATTTCTGTTTAGGGAAAACACCACTGCTCTTTCCTTTGGAGAGAAGGAAG
AATTTAAATGTGGCTCTAAACTCTTTGCCGCTAACCTGACGCTATTCGAACGTCCAGCCT
CCTTTATAGGGACCTTGTCTAACATCAAGTGCATTAAGCACTTACCAATGAGTGGTTCCA
AAAAGATTACAAAGATGGAAGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGAAGGAGCTGTCTGGGAGGAATGCCGGTGCGCAACAAGATGGTTGGGTTTGGATTGT
TGTACTTTTTTTTTTGTTCGTTGCATTTTTAGGAACAAAAAAAAAAGCCCAACCCTTCAC
ACCGCTTCATCTGCATCTCTCAGGATCAGAAGCCCGGCCTCAGCGGCTTGGCGGGACGGA
GAAGCATGAGTGCTTAGCACCCCACAGCCAGGGGTGGGTGGGACGGGCACTCGTATTGTG
AGTAACGCAACGACTCTAGCCAAAGGCTGCGGCCAGAGTCCAAGCACAATAGATAACTAT
TATACCCCGCCTCATCCTTGCACCTATTCCTTTGCAGGCTTTAAGCTGAACACTAGTAAA
CCAATTCAAGATTTCTGTTTAGGGAAAACACCACTGCTCTTTCCTTTGGAGAGAAGGAAG
AATTTAAATGTGGCTCTAAACTCTTTGCCGCTAACCTGACGCTATTCGAACGTCCAGCCT
CCTTTATAGGGACCTTGTCTAACATCAAGTGCATTAAGCACTTACCAATGAGTGGTTCCA
AAAAGATTACAAAGATGGAAGAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1-147, - strand, RNAz p=0.99575

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-147, - strand, RNAz p=0.99575

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               43-146, + strand, RNAmicro p=0.999953
               

               
               46-159, - strand, RNAmicro p=0.992867

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               43-146, + strand, RNAmicro p=0.999953
               

               
               46-159, - strand, RNAmicro p=0.992867

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-564, gnl|bosTau2|chr12 (8286938-8286388)
               

               
               1-564, gnl|Hg17|chr13 (49468694-49468058)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-564, gnl|bosTau2|chr12 (8286938-8286388)
               

               
               1-564, gnl|Hg17|chr13 (49468694-49468058)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cbl (0.573987)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.573987)

	43-146, + strand, RNAmicro p=0.999953
	46-159, - strand, RNAmicro p=0.992867

	1-564, gnl\|bosTau2\|chr12 (8286938-8286388)
	1-564, gnl\|Hg17\|chr13 (49468694-49468058)