Non-Coding RNA Search

Ss1.1-rcbl0_012778.5

Sequence:


               
               CAGCTGCCTTATCTATAGTTACTTTTTCATCATCAGTGAAAATGTCAACATGATGAACCA
GCATTTAATTATCTTAGTGTTATTACTTTAATCTTATTGATCCTCTTAAGTGGACTTGGA
GCCTTCCAGGGGTCTACAGACCACACTTTGAGAACCACTGGTGTTATCCAGCCTTTTGAA
ATGTCATTCGGTGAAACCTGTCAGGAAATTAGAATCTTTTATATTTTCATATAGTTAAAA
AAAATTAAATAATAGGACTCTGAAAATTTAGGAGGTATTTAAATACACATTCTTTTTCCG
ATCCCTATAATTGTATATGAATTTAAAGCCTGTTTTTATGGTGTTTTACACCTCCAGTAG
AAACAGGATGTTGGATGAAATGGAATAATGCATTTTTCCAAAAAGATTTAAAAGGAATAT
TTACTAAAGTTAAATGTAGTATGGTTCAATTTAGATACCATGGTTTATGTAAGAAGTGGA
TTGAGTTATGAATCAAATTTCAAGTAATTTATATCAGTTTCAGAGATGCCAATGATAGGC
TTCTATATATTGAAAGTTAGTGACTGTTATCTTTATATTAATAGGCACTGGTTCACCTGA
CATCTAGACATTTGAATATCAGAGAAACTCAATTAGGAAGTACTCCGTCATTCTGGATAT
TAATATCTAGAATGTGATAGAACATTTACTGAGAGATACCTACCCATGACCACTCCTGGC
TAATTAATGAAGATAAAAGTCCTGCACATGTGAACTATTTTAACTTTCTTCTGTATCCTG
CAGTTACATGCTTACTTTTGTCTTTTTAAGGGCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCTGCCTTATCTATAGTTACTTTTTCATCATCAGTGAAAATGTCAACATGATGAACCA
GCATTTAATTATCTTAGTGTTATTACTTTAATCTTATTGATCCTCTTAAGTGGACTTGGA
GCCTTCCAGGGGTCTACAGACCACACTTTGAGAACCACTGGTGTTATCCAGCCTTTTGAA
ATGTCATTCGGTGAAACCTGTCAGGAAATTAGAATCTTTTATATTTTCATATAGTTAAAA
AAAATTAAATAATAGGACTCTGAAAATTTAGGAGGTATTTAAATACACATTCTTTTTCCG
ATCCCTATAATTGTATATGAATTTAAAGCCTGTTTTTATGGTGTTTTACACCTCCAGTAG
AAACAGGATGTTGGATGAAATGGAATAATGCATTTTTCCAAAAAGATTTAAAAGGAATAT
TTACTAAAGTTAAATGTAGTATGGTTCAATTTAGATACCATGGTTTATGTAAGAAGTGGA
TTGAGTTATGAATCAAATTTCAAGTAATTTATATCAGTTTCAGAGATGCCAATGATAGGC
TTCTATATATTGAAAGTTAGTGACTGTTATCTTTATATTAATAGGCACTGGTTCACCTGA
CATCTAGACATTTGAATATCAGAGAAACTCAATTAGGAAGTACTCCGTCATTCTGGATAT
TAATATCTAGAATGTGATAGAACATTTACTGAGAGATACCTACCCATGACCACTCCTGGC
TAATTAATGAAGATAAAAGTCCTGCACATGTGAACTATTTTAACTTTCTTCTGTATCCTG
CAGTTACATGCTTACTTTTGTCTTTTTAAGGGCAGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               589-707, + strand, RNAz p=0.849793

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               589-707, + strand, RNAz p=0.849793

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC018663, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC018663, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-707, gnl|bosTau2|chr11 (28024441-28023723)
               

               
               1-707, gnl|Hg17|chr11 (95754704-95754000)
               

               
               1-707, gnl|Mm7|chrUn_random (1219454-1220194)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-707, gnl|bosTau2|chr11 (28024441-28023723)
               

               
               1-707, gnl|Hg17|chr11 (95754704-95754000)
               

               
               1-707, gnl|Mm7|chrUn_random (1219454-1220194)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               gul (0.177588)
               

               
               sin (0.174948)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               cbl (0.114797)

	1-707, gnl\|bosTau2\|chr11 (28024441-28023723)
	1-707, gnl\|Hg17\|chr11 (95754704-95754000)
	1-707, gnl\|Mm7\|chrUn_random (1219454-1220194)

	gul (0.177588)
	sin (0.174948)
	sug (0.127291)
	pgl (0.118483)
	cbl (0.114797)