Non-Coding RNA Search

Ss1.1-rcbl0_013967.5

Sequence:


               
               CGGGAATCAAGGTTACTCACAGAATTACTTGCAGTGCAAAAATTTCGCTTCTCTTTCAAC
CTGAAATGTATTTGGTGGGGATTCCTTCCTTTTATTAAACTGAAACTACATAGAAAAGGT
TGATTTTTCTTAATAGATTCTGGATTCCGTTCACAGGGAGACAGGATTCCTTTCTTGTCC
AAACAAAGGAAGTTGATCTAAAGTAAGCATCAGTGAAAATGTAGGGGGAAATGTATTTTG
TATTTAGTGTAGATAATACTTTGTGAATGGACAACAGTTACATAGAGTCTTGATAGTTCC
AGCCAGTGTTTCCCAGTCCAATTTTTACTGACTTAGAATTCTCTGTCCTGGAATCTCAGG
AGTGAGAGCTGGAAAGAGAGATTAAAGTCCCAGAGCCACTCCATATGGCTGGGAGGAGAG
ATAGACACCATGTGGTAAATTGATTTTGCCACCTATGTCTGGAAACTGCTGGTGGGGGAA
ACACTGGATCTAATGGTGAAGGATGTTTGCTCGAACTCATTAGCCAGTCCAAATCTCTTA
AACTAGCCTTCTCAAAATCCCAGCAATATAAAGCACTGTTTTTCTTCAGTCTTTTAAAGA
AGCTTGTAAATACATTAAAGTTTACATTTCCATGTGCTGTTGATCAGCGGCGCCACCAGT
GTTTGCTGAGACTGGTCTCTGAGAGTTTTATAATGTATATGGAGTCCTAAAGCTCATTAA
GATACAAGCGCAGACCTCCTTATTCTCTCCATAGAGTGGGATGAAAGCAAGCTCTGTAAT
AGAGGCACAACATAGGTGGGAGTGAAGAAGATGGCAGATGTTAATTAATTTCTTAAGGTT
TTCCTTTTTTGCAAATACCTCACTTGGACACTACAAATCAGGACATGTTGGTGAGGGGCT
GGCTGCTGCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGAATCAAGGTTACTCACAGAATTACTTGCAGTGCAAAAATTTCGCTTCTCTTTCAAC
CTGAAATGTATTTGGTGGGGATTCCTTCCTTTTATTAAACTGAAACTACATAGAAAAGGT
TGATTTTTCTTAATAGATTCTGGATTCCGTTCACAGGGAGACAGGATTCCTTTCTTGTCC
AAACAAAGGAAGTTGATCTAAAGTAAGCATCAGTGAAAATGTAGGGGGAAATGTATTTTG
TATTTAGTGTAGATAATACTTTGTGAATGGACAACAGTTACATAGAGTCTTGATAGTTCC
AGCCAGTGTTTCCCAGTCCAATTTTTACTGACTTAGAATTCTCTGTCCTGGAATCTCAGG
AGTGAGAGCTGGAAAGAGAGATTAAAGTCCCAGAGCCACTCCATATGGCTGGGAGGAGAG
ATAGACACCATGTGGTAAATTGATTTTGCCACCTATGTCTGGAAACTGCTGGTGGGGGAA
ACACTGGATCTAATGGTGAAGGATGTTTGCTCGAACTCATTAGCCAGTCCAAATCTCTTA
AACTAGCCTTCTCAAAATCCCAGCAATATAAAGCACTGTTTTTCTTCAGTCTTTTAAAGA
AGCTTGTAAATACATTAAAGTTTACATTTCCATGTGCTGTTGATCAGCGGCGCCACCAGT
GTTTGCTGAGACTGGTCTCTGAGAGTTTTATAATGTATATGGAGTCCTAAAGCTCATTAA
GATACAAGCGCAGACCTCCTTATTCTCTCCATAGAGTGGGATGAAAGCAAGCTCTGTAAT
AGAGGCACAACATAGGTGGGAGTGAAGAAGATGGCAGATGTTAATTAATTTCTTAAGGTT
TTCCTTTTTTGCAAATACCTCACTTGGACACTACAAATCAGGACATGTTGGTGAGGGGCT
GGCTGCTGCTTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               342-443, - strand, RNAz p=0.560595
               

               
               557-676, + strand, RNAz p=0.802284

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               342-443, - strand, RNAz p=0.560595
               

               
               557-676, + strand, RNAz p=0.802284

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AB046787, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB046787, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-912, gnl|bosTau2|chr3 (77021006-77020090)
               

               
               2-912, gnl|Hg17|chr1 (35989507-35990433)
               

               
               2-912, gnl|Mm7|chr4 (125936685-125935789)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-912, gnl|bosTau2|chr3 (77021006-77020090)
               

               
               2-912, gnl|Hg17|chr1 (35989507-35990433)
               

               
               2-912, gnl|Mm7|chr4 (125936685-125935789)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cbl (0.229595)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

	342-443, - strand, RNAz p=0.560595
	557-676, + strand, RNAz p=0.802284

	2-912, gnl\|bosTau2\|chr3 (77021006-77020090)
	2-912, gnl\|Hg17\|chr1 (35989507-35990433)
	2-912, gnl\|Mm7\|chr4 (125936685-125935789)