Non-Coding RNA Search

Ss1.1-rcbl0_014025.5

Sequence:


               
               CACCATAGCCAC------------------------TGCAGCCTACACCACAGCTCATGG
CAATGCCAGATCCCTGACCCACTGAGCAAGTCCAGGGATCAAACCCACAACCTCGTGGTT
CCTAGTTGGATTCATTTCTGCTGGGCCACAATGGGAACTCCCAAATTTGTGACTTTATAT
GGCCCCAACTCTTGACTTCATGATTCCTATTCTTGACCCTGTGACTTTGACTCTGACCCT
ATACCCTAATCCTAACCTTCCAACCATGAATCCCAAATCTGACCCCATAACCCAAATCGC
CACCCCTGATCTGTAAATCTGGTCTGCCCTGCGCAGACCCACCCTCACCACCTGTGGTCC
ACACTAGCCAGGCACTTAGCAAAGGTACCAGCTACTGAGCAGACGAGGCACTGGTGGGGA
AACTGGGGCACAGATGGGGCGGGCACCATGGTGGGTCCTACGGAGACGCCTCCACACCCA
AGCCTTCGGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCATAGCCAC------------------------TGCAGCCTACACCACAGCTCATGG
CAATGCCAGATCCCTGACCCACTGAGCAAGTCCAGGGATCAAACCCACAACCTCGTGGTT
CCTAGTTGGATTCATTTCTGCTGGGCCACAATGGGAACTCCCAAATTTGTGACTTTATAT
GGCCCCAACTCTTGACTTCATGATTCCTATTCTTGACCCTGTGACTTTGACTCTGACCCT
ATACCCTAATCCTAACCTTCCAACCATGAATCCCAAATCTGACCCCATAACCCAAATCGC
CACCCCTGATCTGTAAATCTGGTCTGCCCTGCGCAGACCCACCCTCACCACCTGTGGTCC
ACACTAGCCAGGCACTTAGCAAAGGTACCAGCTACTGAGCAGACGAGGCACTGGTGGGGA
AACTGGGGCACAGATGGGGCGGGCACCATGGTGGGTCCTACGGAGACGCCTCCACACCCA
AGCCTTCGGCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               319-437, - strand, RNAz p=0.700297

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               319-437, - strand, RNAz p=0.700297

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               160-468, gnl|bosTau2|chr2 (75585469-75585162)
               

               
               160-468, gnl|canFam2|chr2 (72493894-72493529)
               

               
               160-468, gnl|dasNov1|scaffold_65727 (6642-6996)
               

               
               160-468, gnl|hg17|chr1 (31575151-31575501)
               

               
               160-468, gnl|Hg17|chr1 (31575516-31575219)
               

               
               160-468, gnl|loxAfr1|scaffold_125701 (4490-4128)
               

               
               160-468, gnl|mm7|chr4 (129699975-129699628)
               

               
               160-468, gnl|Mm7|chr4 (129699611-129699908)
               

               
               160-468, gnl|panTro1|chr1 (32291777-32292127)
               

               
               160-468, gnl|rheMac2|chr1 (34216291-34216631)
               

               
               160-468, gnl|rn3|chr5 (149290926-149290577)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               160-468, gnl|bosTau2|chr2 (75585469-75585162)
               

               
               160-468, gnl|canFam2|chr2 (72493894-72493529)
               

               
               160-468, gnl|dasNov1|scaffold_65727 (6642-6996)
               

               
               160-468, gnl|hg17|chr1 (31575151-31575501)
               

               
               160-468, gnl|Hg17|chr1 (31575516-31575219)
               

               
               160-468, gnl|loxAfr1|scaffold_125701 (4490-4128)
               

               
               160-468, gnl|mm7|chr4 (129699975-129699628)
               

               
               160-468, gnl|Mm7|chr4 (129699611-129699908)
               

               
               160-468, gnl|panTro1|chr1 (32291777-32292127)
               

               
               160-468, gnl|rheMac2|chr1 (34216291-34216631)
               

               
               160-468, gnl|rn3|chr5 (149290926-149290577)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.344392)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)

	160-468, gnl\|bosTau2\|chr2 (75585469-75585162)
	160-468, gnl\|canFam2\|chr2 (72493894-72493529)
	160-468, gnl\|dasNov1\|scaffold_65727 (6642-6996)
	160-468, gnl\|hg17\|chr1 (31575151-31575501)
	160-468, gnl\|Hg17\|chr1 (31575516-31575219)
	160-468, gnl\|loxAfr1\|scaffold_125701 (4490-4128)
	160-468, gnl\|mm7\|chr4 (129699975-129699628)
	160-468, gnl\|Mm7\|chr4 (129699611-129699908)
	160-468, gnl\|panTro1\|chr1 (32291777-32292127)
	160-468, gnl\|rheMac2\|chr1 (34216291-34216631)
	160-468, gnl\|rn3\|chr5 (149290926-149290577)