Non-Coding RNA Search

Ss1.1-rcbl0_014081.5

Sequence:


               
               CATCCAAATAAGAAACATTTCCATCCTCCTACTCTTAAACTAATTAATTACATACCACAT
TTGCATCTGCTTTCCCTAGACTGCATAATTTTGAAACTTAATTTACTAATGAAATTGTGA
TTTTGTTCCTCAGTTAATGAAGGGAAATAGATATAACAGATACACATATTACTTATTGTT
CTCAATTATGTGCTGATATGTCAATGTCTTTCAGGGACTCCTGAGGATTACCCACGATTT
TTTCATATGCATCCCAGGACTGCAGAACTTAGTCTCCTGGAGCCAGTAAATAGAGACTTT
CACCAGAAATTTGATTTGGTTATTAAGGTAAATTTAACTAATTTTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCCAAATAAGAAACATTTCCATCCTCCTACTCTTAAACTAATTAATTACATACCACAT
TTGCATCTGCTTTCCCTAGACTGCATAATTTTGAAACTTAATTTACTAATGAAATTGTGA
TTTTGTTCCTCAGTTAATGAAGGGAAATAGATATAACAGATACACATATTACTTATTGTT
CTCAATTATGTGCTGATATGTCAATGTCTTTCAGGGACTCCTGAGGATTACCCACGATTT
TTTCATATGCATCCCAGGACTGCAGAACTTAGTCTCCTGGAGCCAGTAAATAGAGACTTT
CACCAGAAATTTGATTTGGTTATTAAGGTAAATTTAACTAATTTTTTA

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-348, gnl|bosTau2|chr26 (3966730-3967076)
               

               
               1-348, gnl|canFam2|chr26 (37301265-37300794)
               

               
               1-348, gnl|danRer3|chr12 (3594517-3594956)
               

               
               1-348, gnl|echTel1|scaffold_20930 (1931-2401)
               

               
               1-348, gnl|galGal2|chr6 (5814133-5813680)
               

               
               1-348, gnl|hg17|chr10 (55643565-55644039)
               

               
               1-348, gnl|Hg17|chr10 (55644028-55643682)
               

               
               1-348, gnl|loxAfr1|scaffold_10120 (20010-20487)
               

               
               1-348, gnl|mm7|chr10 (73958993-73958527)
               

               
               1-348, gnl|Mm7|chr10 (73958537-73958878)
               

               
               1-348, gnl|monDom2|scaffold_62 (5816825-5816322)
               

               
               1-348, gnl|oryCun1|scaffold_185433 (3379-2918)
               

               
               1-348, gnl|panTro1|chr8 (56565824-56566294)
               

               
               1-348, gnl|rheMac2|chr9 (83120952-83120477)
               

               
               1-348, gnl|rn3|chr20 (14867482-14867942)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-348, gnl|bosTau2|chr26 (3966730-3967076)
               

               
               1-348, gnl|canFam2|chr26 (37301265-37300794)
               

               
               1-348, gnl|danRer3|chr12 (3594517-3594956)
               

               
               1-348, gnl|echTel1|scaffold_20930 (1931-2401)
               

               
               1-348, gnl|galGal2|chr6 (5814133-5813680)
               

               
               1-348, gnl|hg17|chr10 (55643565-55644039)
               

               
               1-348, gnl|Hg17|chr10 (55644028-55643682)
               

               
               1-348, gnl|loxAfr1|scaffold_10120 (20010-20487)
               

               
               1-348, gnl|mm7|chr10 (73958993-73958527)
               

               
               1-348, gnl|Mm7|chr10 (73958537-73958878)
               

               
               1-348, gnl|monDom2|scaffold_62 (5816825-5816322)
               

               
               1-348, gnl|oryCun1|scaffold_185433 (3379-2918)
               

               
               1-348, gnl|panTro1|chr8 (56565824-56566294)
               

               
               1-348, gnl|rheMac2|chr9 (83120952-83120477)
               

               
               1-348, gnl|rn3|chr20 (14867482-14867942)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cbl (0.344392)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)

	1-348, gnl\|bosTau2\|chr26 (3966730-3967076)
	1-348, gnl\|canFam2\|chr26 (37301265-37300794)
	1-348, gnl\|danRer3\|chr12 (3594517-3594956)
	1-348, gnl\|echTel1\|scaffold_20930 (1931-2401)
	1-348, gnl\|galGal2\|chr6 (5814133-5813680)
	1-348, gnl\|hg17\|chr10 (55643565-55644039)
	1-348, gnl\|Hg17\|chr10 (55644028-55643682)
	1-348, gnl\|loxAfr1\|scaffold_10120 (20010-20487)
	1-348, gnl\|mm7\|chr10 (73958993-73958527)
	1-348, gnl\|Mm7\|chr10 (73958537-73958878)
	1-348, gnl\|monDom2\|scaffold_62 (5816825-5816322)
	1-348, gnl\|oryCun1\|scaffold_185433 (3379-2918)
	1-348, gnl\|panTro1\|chr8 (56565824-56566294)
	1-348, gnl\|rheMac2\|chr9 (83120952-83120477)
	1-348, gnl\|rn3\|chr20 (14867482-14867942)