Ss1.1-rcbl0_015037.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTGAATTCACAACGTCACTGACAAACTTTCAGAAGGTGCAGAGGCAAGCTGCTGAGAA AGAGAAAGAATTTGTTGCTCGAGTAAGAGCCAGTTCCAGAGTTTCTGGTGGTTTTCCTGA GGAGACCTCAAAAGAAAGAAATCTTGTATCCTGGGAAAGCCAAACTCAGCCTCAAGTGCA AGTGCAGGATGAAGAAATTACAGAGGATGACCTTCGCCTTATTCATGAGCGAGAGTCTTC TATTAGGCAACTTGAAGCTGATATTATGGATATTAATGAAATATTTAAAGACTTGGGGAT GATGATTCATGAACAAGGAGATGTAATAGATAGCATAGAAGCCAATGTGGAAAGCTCAGA GGTGCACGTTCAGCAGGCGAACCAGCAGCTGTCAAGGGCAGCAGATTATCAGCGCAAATC CAGAAAAACGCTGTGCATCATCATTTTTATCCTTGTTATCGGAGTTGTAATTATCGGCTT CATAATATGGAGAGTGAAAAGCTAAGATTATAAAGGCGCACACTATTGCACTACACTATG TCAATTACGTAGGAAGACTCCGTTAATCATGGTGGGTTTTTATTATTATTTTAAAGCTGT TGCCTAAAGAGTGGTTCCTATACTTTGTTATTTTTATTTGGGGGAAGTTTTCTTTGAATT AAATCTGATATTTTCTAATACTGAAAGTTTTTCTAAATATCACTGCTGGCATAACTTTCA TGCTTTCAATCTAATAACTGTCAGGTTTTTGCCCACATCGTGTATGCCTTTCATTTATAA TTTATTTATCCTGTTGATTTAGTTTTGGGACTTGGTAAACCTGAAGGTGTGGGTGTTCTC TGTGCATCTCTCTCTCTGTCACAGTGTAACATGCACCCACGTTTATATTACTTCAATTAC AACTCTTCAGTTTAATTTTAATGTGGGCCAGCAGAGGAAATAGTCTCAATAACTTAAATA AATTAACATATATGTTTGTGGGAGTTGTTTGTTTCTTTCTGGTTCTTAGCAGCACAAATT GTCTATTTAACTTTTTTTGTTGTTGTTATTGTCTTAAGATCCTTGTTTATTCTGAAATCA AGGAGTAACTTGCTAGTATATCCCATAGTCCTGATGTGTATATAGTAAGCATTTGCTGTA GATTGCCTAGTAGAATACCAAGCGTAGATTGTTTTTACATAGGCTTAAGTCTGGCGTTCG TTTGCGGGGAATTGTGTAGTCACTGTAAATGTTTAATGTAATTTGGAGAAAGATTATGAC AAATCAATACCTATTGTGTTAGAATTCTAAAGATCCCAGCTTGTTATTCTGCTGTGTATT TCCACAGCTATTATGATGGAAAATTACCTACCTTTCCTTACATCCTATAGAGTAATGGTT ATGTTTGCATCCTTGGGTCACAATTACTTTGGGGAAGTAACTTTCCCACAGTTAATTGTT TTTGAGCATTTATCACAAAATTCTGTTTCCTTTGCGTACTGTTGTGTACCATCTTTCACT GGAAAAGGAGTTGAATGTTTGCCAGTTAACTCACTTGCCTTTTTTAATCAATGTTGTTTT AATGTACTAACCTGAATACTGTAAAGAAGATTATCTTAGTTTATAGTTTGTATTTTATAA TGTTCTTATATCACAGTTTGATAGTGAAGGCAATGTTTTACATGGCAAGCTATGAGACTT CAAATGGGAACAAATACAATATTAAGTAACTAAGTAAATTGTATCTTTGCAGCCAAAATA AAGATGATTTTAAAAGTGAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTGAATTCACAACGTCACTGACAAACTTTCAGAAGGTGCAGAGGCAAGCTGCTGAGAA AGAGAAAGAATTTGTTGCTCGAGTAAGAGCCAGTTCCAGAGTTTCTGGTGGTTTTCCTGA GGAGACCTCAAAAGAAAGAAATCTTGTATCCTGGGAAAGCCAAACTCAGCCTCAAGTGCA AGTGCAGGATGAAGAAATTACAGAGGATGACCTTCGCCTTATTCATGAGCGAGAGTCTTC TATTAGGCAACTTGAAGCTGATATTATGGATATTAATGAAATATTTAAAGACTTGGGGAT GATGATTCATGAACAAGGAGATGTAATAGATAGCATAGAAGCCAATGTGGAAAGCTCAGA GGTGCACGTTCAGCAGGCGAACCAGCAGCTGTCAAGGGCAGCAGATTATCAGCGCAAATC CAGAAAAACGCTGTGCATCATCATTTTTATCCTTGTTATCGGAGTTGTAATTATCGGCTT CATAATATGGAGAGTGAAAAGCTAAGATTATAAAGGCGCACACTATTGCACTACACTATG TCAATTACGTAGGAAGACTCCGTTAATCATGGTGGGTTTTTATTATTATTTTAAAGCTGT TGCCTAAAGAGTGGTTCCTATACTTTGTTATTTTTATTTGGGGGAAGTTTTCTTTGAATT AAATCTGATATTTTCTAATACTGAAAGTTTTTCTAAATATCACTGCTGGCATAACTTTCA TGCTTTCAATCTAATAACTGTCAGGTTTTTGCCCACATCGTGTATGCCTTTCATTTATAA TTTATTTATCCTGTTGATTTAGTTTTGGGACTTGGTAAACCTGAAGGTGTGGGTGTTCTC TGTGCATCTCTCTCTCTGTCACAGTGTAACATGCACCCACGTTTATATTACTTCAATTAC AACTCTTCAGTTTAATTTTAATGTGGGCCAGCAGAGGAAATAGTCTCAATAACTTAAATA AATTAACATATATGTTTGTGGGAGTTGTTTGTTTCTTTCTGGTTCTTAGCAGCACAAATT GTCTATTTAACTTTTTTTGTTGTTGTTATTGTCTTAAGATCCTTGTTTATTCTGAAATCA AGGAGTAACTTGCTAGTATATCCCATAGTCCTGATGTGTATATAGTAAGCATTTGCTGTA GATTGCCTAGTAGAATACCAAGCGTAGATTGTTTTTACATAGGCTTAAGTCTGGCGTTCG TTTGCGGGGAATTGTGTAGTCACTGTAAATGTTTAATGTAATTTGGAGAAAGATTATGAC AAATCAATACCTATTGTGTTAGAATTCTAAAGATCCCAGCTTGTTATTCTGCTGTGTATT TCCACAGCTATTATGATGGAAAATTACCTACCTTTCCTTACATCCTATAGAGTAATGGTT ATGTTTGCATCCTTGGGTCACAATTACTTTGGGGAAGTAACTTTCCCACAGTTAATTGTT TTTGAGCATTTATCACAAAATTCTGTTTCCTTTGCGTACTGTTGTGTACCATCTTTCACT GGAAAAGGAGTTGAATGTTTGCCAGTTAACTCACTTGCCTTTTTTAATCAATGTTGTTTT AATGTACTAACCTGAATACTGTAAAGAAGATTATCTTAGTTTATAGTTTGTATTTTATAA TGTTCTTATATCACAGTTTGATAGTGAAGGCAATGTTTTACATGGCAAGCTATGAGACTT CAAATGGGAACAAATACAATATTAAGTAACTAAGTAAATTGTATCTTTGCAGCCAAAATA AAGATGATTTTAAAAGTGAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 1-107, gnl|bosTau2|chr9 (40387180-40387074) | |
| 1-107, gnl|canFam2|chr1 (28607277-28607450) | |
| 1-107, gnl|danRer3|chr20 (52677227-52677399) | |
| 1-107, gnl|dasNov1|scaffold_43240 (7726-7551) | |
| 1-107, gnl|echTel1|scaffold_317149 (60095-59917) | |
| 1-107, gnl|fr1|chrUn (156756488-156756332) | |
| 1-107, gnl|galGal2|chrUn (10076781-10076953) | |
| 1-107, gnl|hg17|chr6 (132834274-132834451) | |
| 1-107, gnl|Hg17|chr6 (132834400-132834294) | |
| 1-107, gnl|loxAfr1|scaffold_7646 (54756-54580) | |
| 1-107, gnl|mm7|chr10 (23931009-23930838) | |
| 1-107, gnl|Mm7|chr10 (23930885-23930991) | |
| 1-107, gnl|monDom2|scaffold_0 (79135175-79135000) | |
| 1-107, gnl|oryCun1|scaffold_105799 (2391-2216) | |
| 1-107, gnl|panTro1|chr5 (135479356-135479533) | |
| 1-107, gnl|rheMac2|chr4 (131423674-131423497) | |
| 1-107, gnl|rn3|chr1 (21735433-21735608) | |
| 1-107, gnl|tetNig1|chr14 (6631565-6631726) | |
| 410-1758, gnl|bosTau2|chr9 (40376185-40374825) | |
| 410-1758, gnl|Hg17|chr6 (132823685-132822345) | |
| 410-1758, gnl|Mm7|chr10 (23938552-23939880) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-107, gnl|bosTau2|chr9 (40387180-40387074) | |
| 1-107, gnl|canFam2|chr1 (28607277-28607450) | |
| 1-107, gnl|danRer3|chr20 (52677227-52677399) | |
| 1-107, gnl|dasNov1|scaffold_43240 (7726-7551) | |
| 1-107, gnl|echTel1|scaffold_317149 (60095-59917) | |
| 1-107, gnl|fr1|chrUn (156756488-156756332) | |
| 1-107, gnl|galGal2|chrUn (10076781-10076953) | |
| 1-107, gnl|hg17|chr6 (132834274-132834451) | |
| 1-107, gnl|Hg17|chr6 (132834400-132834294) | |
| 1-107, gnl|loxAfr1|scaffold_7646 (54756-54580) | |
| 1-107, gnl|mm7|chr10 (23931009-23930838) | |
| 1-107, gnl|Mm7|chr10 (23930885-23930991) | |
| 1-107, gnl|monDom2|scaffold_0 (79135175-79135000) | |
| 1-107, gnl|oryCun1|scaffold_105799 (2391-2216) | |
| 1-107, gnl|panTro1|chr5 (135479356-135479533) | |
| 1-107, gnl|rheMac2|chr4 (131423674-131423497) | |
| 1-107, gnl|rn3|chr1 (21735433-21735608) | |
| 1-107, gnl|tetNig1|chr14 (6631565-6631726) | |
| 410-1758, gnl|bosTau2|chr9 (40376185-40374825) | |
| 410-1758, gnl|Hg17|chr6 (132823685-132822345) | |
| 410-1758, gnl|Mm7|chr10 (23938552-23939880) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| cbl (4.82149) | |
| kid (0.518941) | |
| fco (0.471624) | |
| lin (0.436808) | |
| amn (0.417711) | |
| ret (0.3862) | |
| pgl (0.35545) | |
| rec (0.346141) | |
| tbr (0.308356) | |
| fat (0.294855) | |
| cte (0.29274) | |
| tra (0.246184) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| liv (0.146284) | |
| ova (0.129132) | |
| sug (0.127291) | |
| thg (0.126791) | |
| eje (0.0988338) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (4.82149) | |
| kid (0.518941) | |
| fco (0.471624) | |
| lin (0.436808) | |
| amn (0.417711) | |
| ret (0.3862) | |
| pgl (0.35545) | |
| rec (0.346141) | |
| tbr (0.308356) | |
| fat (0.294855) | |
| cte (0.29274) | |
| tra (0.246184) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| liv (0.146284) | |
| ova (0.129132) | |
| sug (0.127291) | |
| thg (0.126791) | |
| eje (0.0988338) |