Non-Coding RNA Search

Ss1.1-rcbl0_015056.5

Sequence:


               
               CGGATCCTCCTCAACCAGGCCACGGTCAAGTTCCACGTGGACTCCTCTTCCGAGAGCCCC
TTCCTCATCTTGCCCATGACGTTCTACCACGTGCTGGACGAGACGAGCCCCCTGAGAGAT
CTCACCCCCCAAAACCTTAAGGAGAAGGAGTTCGAGCTGGTGGTCCTCCTCAACGCCACC
GTGGAGTCCACCAGCGCCGTCTGCCAGAGCCGCACGTCCTACATCCCGGAGGAGATCTAC
TGGGGCTTTGAGTTTGTGCCTGTGGTCTCTCTCTCCAAAACCGGCAAGTACGTGGCTGAC
TTCAGTCAGTTTGAACAGATCCGGAAGAGCCCAGATTGTACCTTTTACTGCGCAGACTCC
GAGAAGCAGAAACTGGAGGAGAAGTACAGGCAGGAGGATCAGAGGGAAAGAGAGCTGAGA
ACGCTTTTGCTACAGCAGAGCAACGTCTGATGTCAGCGGTGTCGCCTCAGCTTAGCTCCT
TCCGTCAGTTCTGCTTCCCCGTCTGAGCTCCTTCCCAATGAAGAGGTCACCAGGAAAACA
AAACTGCGTGGCCACGCTCTAAAAAAACTGCACTGAGATGCAGACCTGTTCCTTTGATCT
GGTGGCTAAGCAAGCATTTCCACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGATCCTCCTCAACCAGGCCACGGTCAAGTTCCACGTGGACTCCTCTTCCGAGAGCCCC
TTCCTCATCTTGCCCATGACGTTCTACCACGTGCTGGACGAGACGAGCCCCCTGAGAGAT
CTCACCCCCCAAAACCTTAAGGAGAAGGAGTTCGAGCTGGTGGTCCTCCTCAACGCCACC
GTGGAGTCCACCAGCGCCGTCTGCCAGAGCCGCACGTCCTACATCCCGGAGGAGATCTAC
TGGGGCTTTGAGTTTGTGCCTGTGGTCTCTCTCTCCAAAACCGGCAAGTACGTGGCTGAC
TTCAGTCAGTTTGAACAGATCCGGAAGAGCCCAGATTGTACCTTTTACTGCGCAGACTCC
GAGAAGCAGAAACTGGAGGAGAAGTACAGGCAGGAGGATCAGAGGGAAAGAGAGCTGAGA
ACGCTTTTGCTACAGCAGAGCAACGTCTGATGTCAGCGGTGTCGCCTCAGCTTAGCTCCT
TCCGTCAGTTCTGCTTCCCCGTCTGAGCTCCTTCCCAATGAAGAGGTCACCAGGAAAACA
AAACTGCGTGGCCACGCTCTAAAAAAACTGCACTGAGATGCAGACCTGTTCCTTTGATCT
GGTGGCTAAGCAAGCATTTCCACA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               3-161, - strand, RNAz p=0.809773
               

               
               402-521, + strand, RNAz p=0.659401

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-161, - strand, RNAz p=0.809773
               

               
               402-521, + strand, RNAz p=0.659401

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_170736, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_170736, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-624, gnl|bosTau2|chr1 (97289934-97289321)
               

               
               3-624, gnl|Hg17|chr21 (38593734-38594353)
               

               
               3-624, gnl|Mm7|chr16 (95603202-95603799)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-624, gnl|bosTau2|chr1 (97289934-97289321)
               

               
               3-624, gnl|Hg17|chr21 (38593734-38594353)
               

               
               3-624, gnl|Mm7|chr16 (95603202-95603799)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.229595)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)

	3-161, - strand, RNAz p=0.809773
	402-521, + strand, RNAz p=0.659401

	3-624, gnl\|bosTau2\|chr1 (97289934-97289321)
	3-624, gnl\|Hg17\|chr21 (38593734-38594353)
	3-624, gnl\|Mm7\|chr16 (95603202-95603799)