Non-Coding RNA Search

Ss1.1-rcbl0_015067.5

Sequence:


               
               GAGGGAGCCCGCGCTCTGGGCGGCGGCTGGAGGCAGCGCACCGAGTTCCCGCGAGGATCA
ATGACCCGACGGGGCGCCGGAGCCGCTCTGCTCTCGTGTGGCCTGGGTCAGTGGTGAGCG
CGGTGCTCCGCGGACCGGAGGCCGGGCCGAAGGGCCGCAGTCTCCCGCGGCGGAGTGAGG
TGAAGGCGGCCGAGCAGGAGCCGGCGGCGGCGCTTGTACGGCGCCTGCGGGGGGAAGGGC
AGTTCCGGGCCGGGCCGCGCCTCAGCAGGGCGGCGGCTCTCCCAACGCAGACTCAGGCCG
CGGCGACGGGAGGAATCAAGTTGTGTGGTCGGTGATGCCCGAGTGAGCTACGGGCCCGGG
CCTCTGCCCTGAGGAGGCAACTCCCACGCAGGCCGCACGGGCCCCCTCGCGACTGGGAAG
CTCCGTTTCGGTTTCGCGGCGGCGGCGGCGTTGTTGGAGGGGACCCGGGACACCTGAATG
CCCCCGGCCCCGGTTCCTCCGAAGCGATGGGGAAGGTGCTATCTAAGATCTTCGGGAACA
AGGAAATGCGAATCCTCATGTTGGGCCTGGACGCGGCCGGCAAGACAACCATCCTGTACA
AGTTGAAGCTGGGCCAGTCGGTGACCACCATCCCCACCGTGGGTTTCAACGTGGAGACGG
TGACTTACAAAAACGTCAAGTTCAACGTATGGGATGTGGGCGGCCAGGACAAGATCCGGC
CGCTCTGGCGGCATTACTACACCGGGACCCAGGGTCTGATCTTCGTAGTGGACTGCGCCG
ACCGCGACCGCATAGACGAGGCCCGCCAGGAGCTACACCGCATTATCAATGACCGGGAGA
TGAGGGACGCCATAATCCTCATCTTCGCCAACAAGCAGGACCTGCCTGATGCCATGAAAC
CCCACGAGATCCAGGAGAAACTGGGCCTGACCCGGATTCGGGACAGGAACTGGTATGTGC
AGCCCTCCTGTGCCACCTCGGGGGACGGACTCTATGAGGGGCTCACATGGTTAACCTCTA
ACTACAAATCCTAATGAGCATTCTCCACCCATCCCCCAGAAGGAGAGAAATCAAAAACCC
ATTCATAGGATTATCGCCACCATCACCTCTTTGAATTGCCACTTTCTCTTCTTTTGAATT
TGAACTTTGGAGTTACAGTTCTACGGTTTGGGGGAGGGGGTTAGGGGGTTTCTTTTTTGT
TTCTTTTCTTTTTCTTTCTTTCTTTTTTTTTTTTTTGGCTTTGCGTTAGGATGCTCTGAG
CTGACTTTTGACACGAACACAAAGTACTTAGATACTCTCGTTGACTTCCAGCAAATGGGA
TGGGGGAAATACAGCAGTTCTTGATAAATTCCTTTATAATAATGGTTTGATTTTTTTATT
TCGAGAGAATCTTCTTTTCCAATGTATGCTTTTTTCCTTTTTGCCCAGTTTCCTTATCAC
TTGCTGTAGATGGCTTATTTTGCATTCATGCAGACTATGTTGCAAGTCTGTTTCATCTAG
TAAACTGAAAATTATTGCTTAATCAAACTGCCGTTTGTCTTTTATATTTAAGGCCTTTTC
CCCCTCCCTTATGAATTCCAACTTAGTAAATTCAAATGTGACCTTTTATATCTAAGACCA
GTATAGTAAACTTAGCCCACAGGGGCAAATAATGAGTAATATCATTGTAATATGTTCCAG
TTGCACATCAGTATGTTAAAACAGGTAATGTAAGTTCTTTGAAATGTCAGCTTTTAAGTT
CTGAAACATACATCATGCATGAGTAAGGATAAAACTCAAGTTCCCCTTTACAGAGCTAAC
TTACAGTGCATAAAAATATGAAAATGTAACCAGTCAAGGACACAGATTTTTTTTTTCACT
GCAAAGTTAGCAACTTTGCTGTGTTTTCCCTCTTTTTTAACTTTAAAAACAGACTCTTCC
AGAAAATGGAGCAATAATGTTGTATGCCATATACAAAAGAAATATTTGTAGATATTTTAA
GTGACTTTTGGGCAAAACTGGAATATATCTTTTACTATGTTTCAAATGTCTAAGACCAAT
CATATTAAAATTACCAGAATGTTTACTTTGTTCATTAATAAAGCATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGGAGCCCGCGCTCTGGGCGGCGGCTGGAGGCAGCGCACCGAGTTCCCGCGAGGATCA
ATGACCCGACGGGGCGCCGGAGCCGCTCTGCTCTCGTGTGGCCTGGGTCAGTGGTGAGCG
CGGTGCTCCGCGGACCGGAGGCCGGGCCGAAGGGCCGCAGTCTCCCGCGGCGGAGTGAGG
TGAAGGCGGCCGAGCAGGAGCCGGCGGCGGCGCTTGTACGGCGCCTGCGGGGGGAAGGGC
AGTTCCGGGCCGGGCCGCGCCTCAGCAGGGCGGCGGCTCTCCCAACGCAGACTCAGGCCG
CGGCGACGGGAGGAATCAAGTTGTGTGGTCGGTGATGCCCGAGTGAGCTACGGGCCCGGG
CCTCTGCCCTGAGGAGGCAACTCCCACGCAGGCCGCACGGGCCCCCTCGCGACTGGGAAG
CTCCGTTTCGGTTTCGCGGCGGCGGCGGCGTTGTTGGAGGGGACCCGGGACACCTGAATG
CCCCCGGCCCCGGTTCCTCCGAAGCGATGGGGAAGGTGCTATCTAAGATCTTCGGGAACA
AGGAAATGCGAATCCTCATGTTGGGCCTGGACGCGGCCGGCAAGACAACCATCCTGTACA
AGTTGAAGCTGGGCCAGTCGGTGACCACCATCCCCACCGTGGGTTTCAACGTGGAGACGG
TGACTTACAAAAACGTCAAGTTCAACGTATGGGATGTGGGCGGCCAGGACAAGATCCGGC
CGCTCTGGCGGCATTACTACACCGGGACCCAGGGTCTGATCTTCGTAGTGGACTGCGCCG
ACCGCGACCGCATAGACGAGGCCCGCCAGGAGCTACACCGCATTATCAATGACCGGGAGA
TGAGGGACGCCATAATCCTCATCTTCGCCAACAAGCAGGACCTGCCTGATGCCATGAAAC
CCCACGAGATCCAGGAGAAACTGGGCCTGACCCGGATTCGGGACAGGAACTGGTATGTGC
AGCCCTCCTGTGCCACCTCGGGGGACGGACTCTATGAGGGGCTCACATGGTTAACCTCTA
ACTACAAATCCTAATGAGCATTCTCCACCCATCCCCCAGAAGGAGAGAAATCAAAAACCC
ATTCATAGGATTATCGCCACCATCACCTCTTTGAATTGCCACTTTCTCTTCTTTTGAATT
TGAACTTTGGAGTTACAGTTCTACGGTTTGGGGGAGGGGGTTAGGGGGTTTCTTTTTTGT
TTCTTTTCTTTTTCTTTCTTTCTTTTTTTTTTTTTTGGCTTTGCGTTAGGATGCTCTGAG
CTGACTTTTGACACGAACACAAAGTACTTAGATACTCTCGTTGACTTCCAGCAAATGGGA
TGGGGGAAATACAGCAGTTCTTGATAAATTCCTTTATAATAATGGTTTGATTTTTTTATT
TCGAGAGAATCTTCTTTTCCAATGTATGCTTTTTTCCTTTTTGCCCAGTTTCCTTATCAC
TTGCTGTAGATGGCTTATTTTGCATTCATGCAGACTATGTTGCAAGTCTGTTTCATCTAG
TAAACTGAAAATTATTGCTTAATCAAACTGCCGTTTGTCTTTTATATTTAAGGCCTTTTC
CCCCTCCCTTATGAATTCCAACTTAGTAAATTCAAATGTGACCTTTTATATCTAAGACCA
GTATAGTAAACTTAGCCCACAGGGGCAAATAATGAGTAATATCATTGTAATATGTTCCAG
TTGCACATCAGTATGTTAAAACAGGTAATGTAAGTTCTTTGAAATGTCAGCTTTTAAGTT
CTGAAACATACATCATGCATGAGTAAGGATAAAACTCAAGTTCCCCTTTACAGAGCTAAC
TTACAGTGCATAAAAATATGAAAATGTAACCAGTCAAGGACACAGATTTTTTTTTTCACT
GCAAAGTTAGCAACTTTGCTGTGTTTTCCCTCTTTTTTAACTTTAAAAACAGACTCTTCC
AGAAAATGGAGCAATAATGTTGTATGCCATATACAAAAGAAATATTTGTAGATATTTTAA
GTGACTTTTGGGCAAAACTGGAATATATCTTTTACTATGTTTCAAATGTCTAAGACCAAT
CATATTAAAATTACCAGAATGTTTACTTTGTTCATTAATAAAGCATTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|31559126|gb|AAP50257.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|31559126|gb|AAP50257.1|

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               531-1003, gnl|bosTau2|chr3 (8214289-8214761)
               

               
               531-1003, gnl|Hg17|chr1 (224591587-224592412)
               

               
               531-1003, gnl|Mm7|chr11 (59294996-59294116)
               


               
               537-1002, gnl|bosTau2|chr16 (24148761-24149206)
               

               
               537-1002, gnl|Hg17|chr1 (224591593-224592411)
               

               
               537-1002, gnl|Mm7|chr1 (44128482-44128944)
               


               
               1223-1527, gnl|bosTau2|chr18 (38089254-38088951)
               

               
               1223-1527, gnl|Hg17|chr14 (49430890-49431240)
               

               
               1223-1527, gnl|Mm7|chr12 (67314968-67315285)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               531-1003, gnl|bosTau2|chr3 (8214289-8214761)
               

               
               531-1003, gnl|Hg17|chr1 (224591587-224592412)
               

               
               531-1003, gnl|Mm7|chr11 (59294996-59294116)
               


               
               537-1002, gnl|bosTau2|chr16 (24148761-24149206)
               

               
               537-1002, gnl|Hg17|chr1 (224591593-224592411)
               

               
               537-1002, gnl|Mm7|chr1 (44128482-44128944)
               


               
               1223-1527, gnl|bosTau2|chr18 (38089254-38088951)
               

               
               1223-1527, gnl|Hg17|chr14 (49430890-49431240)
               

               
               1223-1527, gnl|Mm7|chr12 (67314968-67315285)

Expressed library(ies): 38 entry(ies)

More info

Expressed library(ies): 38 entry(ies)

Help | Less info


               
               cbl (0.573987)
               

               
               jej (0.494609)
               

               
               hea (0.408998)
               

               
               ste (0.405625)
               

               
               ton (0.351)
               

               
               mcp (0.341297)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               cst (0.280073)
               

               
               ssp (0.271039)
               

               
               ova (0.258264)
               

               
               ecc (0.23007)
               

               
               spc (0.226732)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 38 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.573987)
               

               
               jej (0.494609)
               

               
               hea (0.408998)
               

               
               ste (0.405625)
               

               
               ton (0.351)
               

               
               mcp (0.341297)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               cst (0.280073)
               

               
               ssp (0.271039)
               

               
               ova (0.258264)
               

               
               ecc (0.23007)
               

               
               spc (0.226732)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	531-1003, gnl\|bosTau2\|chr3 (8214289-8214761)
	531-1003, gnl\|Hg17\|chr1 (224591587-224592412)
	531-1003, gnl\|Mm7\|chr11 (59294996-59294116)

	537-1002, gnl\|bosTau2\|chr16 (24148761-24149206)
	537-1002, gnl\|Hg17\|chr1 (224591593-224592411)
	537-1002, gnl\|Mm7\|chr1 (44128482-44128944)

	1223-1527, gnl\|bosTau2\|chr18 (38089254-38088951)
	1223-1527, gnl\|Hg17\|chr14 (49430890-49431240)
	1223-1527, gnl\|Mm7\|chr12 (67314968-67315285)

	cbl (0.573987)
	jej (0.494609)
	hea (0.408998)
	ste (0.405625)
	ton (0.351)
	mcp (0.341297)
	lin (0.291206)
	spl (0.286369)
	cst (0.280073)
	ssp (0.271039)
	ova (0.258264)
	ecc (0.23007)
	spc (0.226732)
	col (0.195008)
	nep (0.183925)
	fty (0.17584)
	ill (0.175593)
	sin (0.174948)
	rec (0.17307)
	duo (0.172801)
	nco (0.161734)
	csp (0.161186)
	csk (0.140746)
	pla (0.133672)
	nmm (0.132802)
	ute (0.132784)
	cov (0.132153)
	thg (0.126791)
	ese (0.126502)
	bla (0.124347)
	eep (0.122564)
	cly (0.120642)
	eru (0.120048)
	pgl (0.118483)
	jca (0.11396)
	cty (0.10408)
	nbm (0.0993246)
	ldo (0.0970026)