Non-Coding RNA Search

Ss1.1-rcbl0_015081.5

Sequence:


               
               CTCATCATGTGTACTCAAGTAAAATATTCTCCTAGTCTATAAGGTACATTGTTAATGAAG
TCAGAAAGGATGTAGGTAGATGTGAGGCTGTGACTAGACAAACTCTGATTGTGTCCCAGA
TGTTTCTGTGAACTTCTCAATACTGTCTTCAAAGAAATAAACCTCACAGATCTTTTACGG
CTTTAGAACACTTTTAATTCTATAAATAAATGGAAACATCTGCAGCTAAAAACATGGAGA
GTCTAGATATCTAGGTATCTGTTTACTATTATAGCTTAACCATATTTCCTGATAATTTTG
TCTCTAGCTAAAGTTCTCCAGCCACAGACATCAAGAGAGAAGACATTAAGAGTTATAAAA
TATAATCCAAAAAGAAAATGAAGTCAAGAACAGTGGCACCTTTTTGAACTTTTTACTTGA
ATCCTGATTTTTTTCTTCTGTCAGTCATTCACTACTTGAATGTACTTTACATCCATTGAA
ATAATAGAAAAGTTATAGAGATTCAGGAAAGATTCCTATGGCTTTTTTCCAAGCAGCCCA
ACATTAACAGGGGAAATAAAGTCAAAAGAGCTTTTTCTCTGACATGAATTTCTAAACAAT
ATAATTATGGTTCACTCCATGGTTATGAGCTTTAGGAGCTCCCACAAAAAAAGCCTTTGC
TGCAGATGTGGCCACTGGATGCTATGCCCGGCAATTTGATCCATGGTTTTGTTGTTTAGA
ACACAGACACACACACACACACACAATCTTCTTGTATTTGGTAGAGTAAGATGAATCTAG
AGATGAAGGTTAGGTATCCCAATATGGTCTCTATTTGCTTGTTCATGACCAAGGTGGAAG
CTTAGATATCTGATGCCTGTGAAGACTGTACCTATTACTTTCTGCAACCTTTCTGACCTC
ACCTCAAAATTATTTTTTTCAACAACACTATTTAATATGTAAACACACACAAAAAATAAG
TTCAAGCTGGACTATTGATGTTGGGTCACTCTAAGAAATGTCTTCAGTGTAGCTTCAAAA
TTTTATGCTCTTCTCTCCAAATCTAGGTTTATGTCCTGGAACACTTATATGGTATTTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCATCATGTGTACTCAAGTAAAATATTCTCCTAGTCTATAAGGTACATTGTTAATGAAG
TCAGAAAGGATGTAGGTAGATGTGAGGCTGTGACTAGACAAACTCTGATTGTGTCCCAGA
TGTTTCTGTGAACTTCTCAATACTGTCTTCAAAGAAATAAACCTCACAGATCTTTTACGG
CTTTAGAACACTTTTAATTCTATAAATAAATGGAAACATCTGCAGCTAAAAACATGGAGA
GTCTAGATATCTAGGTATCTGTTTACTATTATAGCTTAACCATATTTCCTGATAATTTTG
TCTCTAGCTAAAGTTCTCCAGCCACAGACATCAAGAGAGAAGACATTAAGAGTTATAAAA
TATAATCCAAAAAGAAAATGAAGTCAAGAACAGTGGCACCTTTTTGAACTTTTTACTTGA
ATCCTGATTTTTTTCTTCTGTCAGTCATTCACTACTTGAATGTACTTTACATCCATTGAA
ATAATAGAAAAGTTATAGAGATTCAGGAAAGATTCCTATGGCTTTTTTCCAAGCAGCCCA
ACATTAACAGGGGAAATAAAGTCAAAAGAGCTTTTTCTCTGACATGAATTTCTAAACAAT
ATAATTATGGTTCACTCCATGGTTATGAGCTTTAGGAGCTCCCACAAAAAAAGCCTTTGC
TGCAGATGTGGCCACTGGATGCTATGCCCGGCAATTTGATCCATGGTTTTGTTGTTTAGA
ACACAGACACACACACACACACACAATCTTCTTGTATTTGGTAGAGTAAGATGAATCTAG
AGATGAAGGTTAGGTATCCCAATATGGTCTCTATTTGCTTGTTCATGACCAAGGTGGAAG
CTTAGATATCTGATGCCTGTGAAGACTGTACCTATTACTTTCTGCAACCTTTCTGACCTC
ACCTCAAAATTATTTTTTTCAACAACACTATTTAATATGTAAACACACACAAAAAATAAG
TTCAAGCTGGACTATTGATGTTGGGTCACTCTAAGAAATGTCTTCAGTGTAGCTTCAAAA
TTTTATGCTCTTCTCTCCAAATCTAGGTTTATGTCCTGGAACACTTATATGGTATTTTGC

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-616, gnl|bosTau2|chr1 (34036349-34035729)
               

               
               1-616, gnl|Hg17|chr3 (115753253-115754166)
               

               
               1-616, gnl|Mm7|chr16 (43182343-43181760)
               


               
               724-1078, gnl|bosTau2|chr1 (34035560-34035216)
               

               
               724-1078, gnl|Hg17|chr3 (115754273-115754604)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-616, gnl|bosTau2|chr1 (34036349-34035729)
               

               
               1-616, gnl|Hg17|chr3 (115753253-115754166)
               

               
               1-616, gnl|Mm7|chr16 (43182343-43181760)
               


               
               724-1078, gnl|bosTau2|chr1 (34035560-34035216)
               

               
               724-1078, gnl|Hg17|chr3 (115754273-115754604)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbl (0.344392)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)

	1-616, gnl\|bosTau2\|chr1 (34036349-34035729)
	1-616, gnl\|Hg17\|chr3 (115753253-115754166)
	1-616, gnl\|Mm7\|chr16 (43182343-43181760)

	724-1078, gnl\|bosTau2\|chr1 (34035560-34035216)
	724-1078, gnl\|Hg17\|chr3 (115754273-115754604)