Non-Coding RNA Search

Ss1.1-rcbl0_015110.5

Sequence:


               
               CCCAGACTCAGAGCATGAAGCACGCCACTCTTTCCAGTACGTGGCCTGTGCCACCCTGCT
CGATGGTGCCATTGCTGTCCCATCATTCCACAAACGCCAGATTGACAGGCCACAAGTGAG
AGAGCTGCTTGGTAAGGTGGAGCTAGAGCACCCTCAGGACAACCTACCAAACTTTGACAC
AATGTACTGTGAGATAAGCATTGCCCTCAAGGATGGAGCCATCTTCACAGAACGCTCTGA
TACCTTCTACGGTCATTGGAGGAAGCCTCTGAGCCAGAGGGACCTACAGGAAAAGTTCAG
AGCCAATGCCACCAAGGCATTGTCCTGTCACACAGTAGAAAAGCTTATCAAGATAGTGGA
CAACCTAGAAGACCTGGAAGACTGTTCTGTGTTAACTGCACTTCTGAAAGAACACTCTCT
ATCAGAGATGGTTTCAAAATCTATCTAGTGCTTAACAATTCCATTATACAATCACTTCCA
AGGTTTAAATACAATCACTATGTCTTACCTGATGGACACATAGAGAACTCTGCACTCAAC
AACCAGAGAAGTCACAATCTTTTAAAAATCTCACAGAACATTTGCAAAAATCAATCATAG
ACGTAAAATCTCAACTTTTCAGAGTTCCCATCATGGCGCAGCAAAAATGAATCCAACTAG
GAACCATGAGGTTGCAGGTTCAATCTCTGGTCTTCCTCAGTGGGTTAAGGATCCATCATT
GCCGTGAGCTATGGTGTAGGTCGCAGACGTGGCTTGGATCCTGTGTTGCTGTGGCTGTGG
CGTAGGCTGGCAACAGTAGCTCCGATTAGACCCTTAGACTGGGAACCTCCATATGCTGTG
GGTGCAGCTCCAAAAACAGCAAAAAAGAAAAAAAAAATCCCAAATTTTCAAAGCAATGGA
TCATACAGATCATTTTCTCTAATCACAGGGCAATCAAGGTAAAAATCAATATAAAAAGAT
AATTAGGAAAGCCTGAAGCGTTTAAAAATAAACATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGACTCAGAGCATGAAGCACGCCACTCTTTCCAGTACGTGGCCTGTGCCACCCTGCT
CGATGGTGCCATTGCTGTCCCATCATTCCACAAACGCCAGATTGACAGGCCACAAGTGAG
AGAGCTGCTTGGTAAGGTGGAGCTAGAGCACCCTCAGGACAACCTACCAAACTTTGACAC
AATGTACTGTGAGATAAGCATTGCCCTCAAGGATGGAGCCATCTTCACAGAACGCTCTGA
TACCTTCTACGGTCATTGGAGGAAGCCTCTGAGCCAGAGGGACCTACAGGAAAAGTTCAG
AGCCAATGCCACCAAGGCATTGTCCTGTCACACAGTAGAAAAGCTTATCAAGATAGTGGA
CAACCTAGAAGACCTGGAAGACTGTTCTGTGTTAACTGCACTTCTGAAAGAACACTCTCT
ATCAGAGATGGTTTCAAAATCTATCTAGTGCTTAACAATTCCATTATACAATCACTTCCA
AGGTTTAAATACAATCACTATGTCTTACCTGATGGACACATAGAGAACTCTGCACTCAAC
AACCAGAGAAGTCACAATCTTTTAAAAATCTCACAGAACATTTGCAAAAATCAATCATAG
ACGTAAAATCTCAACTTTTCAGAGTTCCCATCATGGCGCAGCAAAAATGAATCCAACTAG
GAACCATGAGGTTGCAGGTTCAATCTCTGGTCTTCCTCAGTGGGTTAAGGATCCATCATT
GCCGTGAGCTATGGTGTAGGTCGCAGACGTGGCTTGGATCCTGTGTTGCTGTGGCTGTGG
CGTAGGCTGGCAACAGTAGCTCCGATTAGACCCTTAGACTGGGAACCTCCATATGCTGTG
GGTGCAGCTCCAAAAACAGCAAAAAAGAAAAAAAAAATCCCAAATTTTCAAAGCAATGGA
TCATACAGATCATTTTCTCTAATCACAGGGCAATCAAGGTAAAAATCAATATAAAAAGAT
AATTAGGAAAGCCTGAAGCGTTTAAAAATAAACATT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               121-240, - strand, RNAz p=0.793248
               

               
               370-493, - strand, RNAz p=0.864805

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-240, - strand, RNAz p=0.793248
               

               
               370-493, - strand, RNAz p=0.864805

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               1-493, gnl|bosTau2|chr12 (26239402-26238911)
               

               
               1-493, gnl|canFam2|chr22 (33501138-33501951)
               

               
               1-493, gnl|danRer3|chr15 (41606714-41605914)
               

               
               1-493, gnl|echTel1|scaffold_28303 (1050-1863)
               

               
               1-493, gnl|fr1|chrUn (155205708-155206530)
               

               
               1-493, gnl|galGal2|chr1 (151213000-151212184)
               

               
               1-493, gnl|hg17|chr13 (76429240-76430053)
               

               
               1-493, gnl|Hg17|chr13 (76429645-76430133)
               

               
               1-493, gnl|loxAfr1|scaffold_6537 (33738-34555)
               

               
               1-493, gnl|mm7|chr14 (97487537-97488353)
               

               
               1-493, gnl|Mm7|chr14 (97487945-97488434)
               

               
               1-493, gnl|monDom2|scaffold_8 (14449250-14450045)
               

               
               1-493, gnl|panTro1|chr14_random (37345873-37346688)
               

               
               1-493, gnl|rheMac2|chr17 (57445015-57445828)
               

               
               1-493, gnl|rn3|chr15 (87080769-87081585)
               

               
               1-493, gnl|tetNig1|chr2 (8166237-8167034)
               

               
               1-493, gnl|xenTro1|scaffold_141 (1977389-1978202)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-493, gnl|bosTau2|chr12 (26239402-26238911)
               

               
               1-493, gnl|canFam2|chr22 (33501138-33501951)
               

               
               1-493, gnl|danRer3|chr15 (41606714-41605914)
               

               
               1-493, gnl|echTel1|scaffold_28303 (1050-1863)
               

               
               1-493, gnl|fr1|chrUn (155205708-155206530)
               

               
               1-493, gnl|galGal2|chr1 (151213000-151212184)
               

               
               1-493, gnl|hg17|chr13 (76429240-76430053)
               

               
               1-493, gnl|Hg17|chr13 (76429645-76430133)
               

               
               1-493, gnl|loxAfr1|scaffold_6537 (33738-34555)
               

               
               1-493, gnl|mm7|chr14 (97487537-97488353)
               

               
               1-493, gnl|Mm7|chr14 (97487945-97488434)
               

               
               1-493, gnl|monDom2|scaffold_8 (14449250-14450045)
               

               
               1-493, gnl|panTro1|chr14_random (37345873-37346688)
               

               
               1-493, gnl|rheMac2|chr17 (57445015-57445828)
               

               
               1-493, gnl|rn3|chr15 (87080769-87081585)
               

               
               1-493, gnl|tetNig1|chr2 (8166237-8167034)
               

               
               1-493, gnl|xenTro1|scaffold_141 (1977389-1978202)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cbl (0.229595)
               

               
               nmm (0.132802)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)
               

               
               nmm (0.132802)

	121-240, - strand, RNAz p=0.793248
	370-493, - strand, RNAz p=0.864805

	1-493, gnl\|bosTau2\|chr12 (26239402-26238911)
	1-493, gnl\|canFam2\|chr22 (33501138-33501951)
	1-493, gnl\|danRer3\|chr15 (41606714-41605914)
	1-493, gnl\|echTel1\|scaffold_28303 (1050-1863)
	1-493, gnl\|fr1\|chrUn (155205708-155206530)
	1-493, gnl\|galGal2\|chr1 (151213000-151212184)
	1-493, gnl\|hg17\|chr13 (76429240-76430053)
	1-493, gnl\|Hg17\|chr13 (76429645-76430133)
	1-493, gnl\|loxAfr1\|scaffold_6537 (33738-34555)
	1-493, gnl\|mm7\|chr14 (97487537-97488353)
	1-493, gnl\|Mm7\|chr14 (97487945-97488434)
	1-493, gnl\|monDom2\|scaffold_8 (14449250-14450045)
	1-493, gnl\|panTro1\|chr14_random (37345873-37346688)
	1-493, gnl\|rheMac2\|chr17 (57445015-57445828)
	1-493, gnl\|rn3\|chr15 (87080769-87081585)
	1-493, gnl\|tetNig1\|chr2 (8166237-8167034)
	1-493, gnl\|xenTro1\|scaffold_141 (1977389-1978202)