Non-Coding RNA Search

Ss1.1-rcbl0_015169.5

Sequence:


               
               ATTGAGTAGAGAAAGAAGGGCAGGCCCCTCCTCATCTCACAGCAGGAGTGTCAGGCTGTG
GCCAGTGCAGGGTGGGACTTCCTAGCTTTGAAAGATTCCTCTGAGATGAGGCATCTCGGA
GAGAACTGAGTCCTTAGGGCAGTAGGAATGGACTTCAGAGGAGAAACTGTGAGGGGCGAT
CCTCCTTCAGCTGCCTCTACTTGGTACCTTCGAGAGGACCTAGAGTGACTGAGTCTTCTG
CCCCTGAGAAGGCTTCTTCTGCCTCTGCCTTCGTGGCTCTTAGGGTTCTAATCCTGACAT
CAGCAGCCCCAACCACTCTATTTCTGTATGTCTAGTCAGTATTTTCCCCCTTTTGATGTT
TTATGAAGCCGTATCAGTGAATCTCTATCATCTTTCCTACTTGAGTGGCCCAAAGCCAGC
ACCGAGACCTGATAGTCCCTGAAGCGTAACAGAACAGGAGGAACCTGCCAAGTGAGAGGA
ATTTGGCTGAAAACTCCCTTCTAATCCCTGTGTCTTCATGTCCTTGTAGACAGGAGCAAG
CTAGTTTTCCCAAGGAGAAAGAGTATCCTAGAAAGGTTTGATGATCTTACTTAAGGATGT
GAGCTTTGTGTTTCTCCTGGGCCTTAGTATTTGGGGTCGCAGGAGCTGCCTTGATGAGTC
TCACATCCTGCCTCCCTAGAAGGAGCTAAATTAATTTTTGTTTCATTTTCCTTAACCAAA
AAAAATGAATGTTTGATATCTGTGTAATATTTTGGAAGGACCTGTGCCATGGAAGTTTTG
CCACTTCGGTAACATGGGTTATGTAAAGGTTGCTGCTCCAAGAAAACCCTACAGCTGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGAGTAGAGAAAGAAGGGCAGGCCCCTCCTCATCTCACAGCAGGAGTGTCAGGCTGTG
GCCAGTGCAGGGTGGGACTTCCTAGCTTTGAAAGATTCCTCTGAGATGAGGCATCTCGGA
GAGAACTGAGTCCTTAGGGCAGTAGGAATGGACTTCAGAGGAGAAACTGTGAGGGGCGAT
CCTCCTTCAGCTGCCTCTACTTGGTACCTTCGAGAGGACCTAGAGTGACTGAGTCTTCTG
CCCCTGAGAAGGCTTCTTCTGCCTCTGCCTTCGTGGCTCTTAGGGTTCTAATCCTGACAT
CAGCAGCCCCAACCACTCTATTTCTGTATGTCTAGTCAGTATTTTCCCCCTTTTGATGTT
TTATGAAGCCGTATCAGTGAATCTCTATCATCTTTCCTACTTGAGTGGCCCAAAGCCAGC
ACCGAGACCTGATAGTCCCTGAAGCGTAACAGAACAGGAGGAACCTGCCAAGTGAGAGGA
ATTTGGCTGAAAACTCCCTTCTAATCCCTGTGTCTTCATGTCCTTGTAGACAGGAGCAAG
CTAGTTTTCCCAAGGAGAAAGAGTATCCTAGAAAGGTTTGATGATCTTACTTAAGGATGT
GAGCTTTGTGTTTCTCCTGGGCCTTAGTATTTGGGGTCGCAGGAGCTGCCTTGATGAGTC
TCACATCCTGCCTCCCTAGAAGGAGCTAAATTAATTTTTGTTTCATTTTCCTTAACCAAA
AAAAATGAATGTTTGATATCTGTGTAATATTTTGGAAGGACCTGTGCCATGGAAGTTTTG
CCACTTCGGTAACATGGGTTATGTAAAGGTTGCTGCTCCAAGAAAACCCTACAGCTGGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               83-186, + strand, RNAz p=0.991571

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-186, + strand, RNAz p=0.991571

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-840, gnl|bosTau2|chr10 (56694033-56693234)
               

               
               4-840, gnl|Hg17|chr14 (74620361-74619473)
               

               
               4-840, gnl|Mm7|chr12 (83301014-83300211)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-840, gnl|bosTau2|chr10 (56694033-56693234)
               

               
               4-840, gnl|Hg17|chr14 (74620361-74619473)
               

               
               4-840, gnl|Mm7|chr12 (83301014-83300211)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cbl (0.229595)
               

               
               fty (0.17584)
               

               
               cov (0.132153)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)
               

               
               fty (0.17584)
               

               
               cov (0.132153)

	4-840, gnl\|bosTau2\|chr10 (56694033-56693234)
	4-840, gnl\|Hg17\|chr14 (74620361-74619473)
	4-840, gnl\|Mm7\|chr12 (83301014-83300211)